JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C1orf202_chr1_244724701_244736015	0/0	t0018	766	1	0	0	0	0	1	copy fasta	C1orf202	chr1	244724701	244736015
C1orf202_chr1_244724701_244736015	0/0	t0019	765	1	0	0	0	0	1	copy fasta	C1orf202	chr1	244724701	244736015
C1orf202_chr1_244724701_244736015	0/0	t0020	767	1	0	0	1	0	0	copy fasta	C1orf202	chr1	244724701	244736015
C1orf202_chr1_244724701_244736015	0/0	t0021	765	1	0	0	1	0	0	copy fasta	C1orf202	chr1	244724701	244736015
C1orf202_chr1_244724701_244736015	0/0	t0022	767	1	1	0	0	0	0	copy fasta	C1orf202	chr1	244724701	244736015
C1orf202_chr1_244724701_244736015	0/0	t0023	766	1	1	0	0	0	0	copy fasta	C1orf202	chr1	244724701	244736015
C1orf202_chr1_244724701_244736015	0/0	t0024	765	1	1	0	0	0	0	copy fasta	C1orf202	chr1	244724701	244736015
C1orf210_chr1_43276877_43290581	0/0	t0001	1146	194	30	30	101	9	24	copy fasta	C1orf210	chr1	43276877	43290581
C1orf210_chr1_43276877_43290581	0/0	t0002	1146	173	25	40	87	6	15	copy fasta	C1orf210	chr1	43276877	43290581
C1orf210_chr1_43276877_43290581	0/1	t0003	1146	41	14	7	13	1	5	copy fasta	C1orf210	chr1	43276877	43290581
C1orf210_chr1_43276877_43290581	0/0	t0004	1146	17	15	2	0	0	0	copy fasta	C1orf210	chr1	43276877	43290581
C1orf210_chr1_43276877_43290581	0/0	t0005	1145	3	0	2	1	0	0	copy fasta	C1orf210	chr1	43276877	43290581
C1orf210_chr1_43276877_43290581	1/0	t0006	1145	3	2	0	0	0	0	copy fasta	C1orf210	chr1	43276877	43290581
C1orf210_chr1_43276877_43290581	0/0	t0007	1146	3	3	0	0	0	0	copy fasta	C1orf210	chr1	43276877	43290581
C1orf210_chr1_43276877_43290581	0/0	t0008	1146	2	1	1	0	0	0	copy fasta	C1orf210	chr1	43276877	43290581
C1orf210_chr1_43276877_43290581	0/0	t0009	1145	2	2	0	0	0	0	copy fasta	C1orf210	chr1	43276877	43290581
C1orf210_chr1_43276877_43290581	0/0	t0010	1145	1	0	0	1	0	0	copy fasta	C1orf210	chr1	43276877	43290581
C1orf210_chr1_43276877_43290581	0/0	t0011	1146	1	0	0	1	0	0	copy fasta	C1orf210	chr1	43276877	43290581
C1orf210_chr1_43276877_43290581	0/0	t0012	1146	1	1	0	0	0	0	copy fasta	C1orf210	chr1	43276877	43290581
C1orf210_chr1_43276877_43290581	0/0	t0013	1146	1	1	0	0	0	0	copy fasta	C1orf210	chr1	43276877	43290581
C1orf216_chr1_35708877_35723884	1/0	t0001	1939	216	66	45	52	15	37	copy fasta	C1orf216	chr1	35708877	35723884
C1orf216_chr1_35708877_35723884	0/0	t0002	1939	105	6	20	75	1	3	copy fasta	C1orf216	chr1	35708877	35723884
C1orf216_chr1_35708877_35723884	0/1	t0003	1939	32	18	2	9	0	2	copy fasta	C1orf216	chr1	35708877	35723884
C1orf216_chr1_35708877_35723884	0/0	t0004	1939	4	2	2	0	0	0	copy fasta	C1orf216	chr1	35708877	35723884
C1orf216_chr1_35708877_35723884	0/0	t0005	1939	3	0	1	0	0	2	copy fasta	C1orf216	chr1	35708877	35723884
C1orf216_chr1_35708877_35723884	0/0	t0006	1939	3	0	0	0	0	3	copy fasta	C1orf216	chr1	35708877	35723884
C1orf216_chr1_35708877_35723884	0/0	t0007	1939	2	0	0	2	0	0	copy fasta	C1orf216	chr1	35708877	35723884
C1orf216_chr1_35708877_35723884	0/0	t0008	1939	2	0	0	2	0	0	copy fasta	C1orf216	chr1	35708877	35723884
C1orf216_chr1_35708877_35723884	0/0	t0009	1939	1	0	0	1	0	0	copy fasta	C1orf216	chr1	35708877	35723884
C1orf216_chr1_35708877_35723884	0/0	t0010	1939	1	1	0	0	0	0	copy fasta	C1orf216	chr1	35708877	35723884
C1orf216_chr1_35708877_35723884	0/0	t0011	1939	1	1	0	0	0	0	copy fasta	C1orf216	chr1	35708877	35723884
C1orf216_chr1_35708877_35723884	0/0	t0012	1939	1	1	0	0	0	0	copy fasta	C1orf216	chr1	35708877	35723884
C1orf216_chr1_35708877_35723884	0/0	t0013	1939	1	0	0	1	0	0	copy fasta	C1orf216	chr1	35708877	35723884
C1orf216_chr1_35708877_35723884	0/0	t0014	1939	1	0	1	0	0	0	copy fasta	C1orf216	chr1	35708877	35723884
C1orf216_chr1_35708877_35723884	0/0	t0015	1939	1	1	0	0	0	0	copy fasta	C1orf216	chr1	35708877	35723884
C1orf216_chr1_35708877_35723884	0/0	t0016	1939	1	0	1	0	0	0	copy fasta	C1orf216	chr1	35708877	35723884
C1orf216_chr1_35708877_35723884	0/0	t0017	1939	1	0	0	0	0	1	copy fasta	C1orf216	chr1	35708877	35723884
C1orf21_chr1_184382029_184634019	1/0	t0001	9928	60	24	11	14	2	8	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0002	9928	47	0	5	38	1	3	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0003	9928	11	7	0	0	1	3	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0004	9929	9	0	0	9	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0005	9928	8	4	1	2	1	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0006	9928	6	0	2	0	0	4	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0007	9928	6	5	0	0	0	1	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0008	9929	6	3	2	0	0	1	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0009	9928	4	0	2	0	2	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0010	9928	3	1	2	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0011	9928	3	3	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0012	9928	2	2	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0013	9928	2	1	1	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019