JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZIM3_chr19_57129096_57150202	0/0	t0014	1209	1	0	0	1	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0015	1209	1	0	0	1	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0016	1209	1	1	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0017	1209	1	1	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0018	1209	1	0	0	0	1	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0019	1209	1	0	1	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0020	1209	1	0	0	1	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0021	1209	1	1	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0022	1209	1	0	0	0	0	1	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0023	1209	1	0	0	0	1	0	copy fasta	ZIM3	chr19	57129096	57150202
ZIM3_chr19_57129096_57150202	0/0	t0024	1209	1	1	0	0	0	0	copy fasta	ZIM3	chr19	57129096	57150202
ZKSCAN1_chr7_100010596_100046689	0/0	t0001	7712	79	18	12	36	2	11	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0002	7712	78	0	15	49	5	9	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	1/0	t0003	7712	43	2	10	23	3	4	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/1	t0004	7711	31	22	4	0	0	4	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0005	7712	14	4	1	4	0	5	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0006	7711	13	1	8	0	3	1	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0007	7712	12	0	4	7	1	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0008	7711	12	0	2	6	1	3	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0009	7712	8	0	0	8	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0010	7712	6	0	0	6	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0011	7712	6	2	1	1	0	2	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0012	7707	6	5	1	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0013	7711	5	5	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0014	7712	5	0	0	5	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0015	7711	4	1	3	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0016	7712	4	0	0	4	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0017	7712	3	0	1	0	0	2	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0018	7711	3	3	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0019	7712	3	0	2	1	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0020	7713	3	0	3	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0021	7712	3	3	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0022	7711	3	0	0	0	2	1	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0023	7712	3	3	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0024	7711	2	2	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0025	7712	2	2	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0026	7711	2	0	0	2	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0027	7712	2	2	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0028	7711	2	0	1	0	0	1	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0029	7712	2	2	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0030	7712	2	0	0	0	0	2	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0031	7712	1	0	0	1	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0032	7711	1	1	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0033	7711	1	0	1	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0034	7712	1	1	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0035	7711	1	1	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0036	7712	1	0	0	1	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0037	7711	1	0	0	1	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0038	7712	1	0	0	0	0	1	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0039	7712	1	0	0	1	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689