JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZKSCAN1_chr7_100010596_100046689	0/0	t0040	7712	1	0	0	1	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0041	7712	1	0	0	1	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0042	7712	1	0	0	1	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0043	7711	1	0	0	0	1	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0044	7712	1	0	1	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0045	7711	1	1	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0046	7710	1	1	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0047	7711	1	0	0	1	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0048	7710	1	1	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0049	7711	1	0	0	0	0	1	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0050	7712	1	1	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0051	7712	1	0	0	0	0	1	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0052	7712	1	1	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0053	7711	1	1	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0054	7711	1	1	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0055	7711	1	0	0	1	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0056	7712	1	0	0	1	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0057	7712	1	0	0	1	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0058	7712	1	0	0	1	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0059	7712	1	0	0	1	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0060	7711	1	1	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0061	7711	1	1	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0062	7712	1	1	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0063	7711	1	1	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0064	7712	1	0	0	1	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0065	7711	1	1	0	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0066	7712	1	0	1	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN1_chr7_100010596_100046689	0/0	t0067	7711	1	0	1	0	0	0	copy fasta	ZKSCAN1	chr7	100010596	100046689
ZKSCAN2_chr16_25231001_25262845	1/1	t0001	4534	107	0	27	63	3	12	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0002	4534	64	4	11	41	2	6	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0003	4533	39	0	3	30	2	4	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0004	4533	30	10	9	9	0	2	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0005	4532	18	3	3	0	1	11	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0006	4534	14	13	1	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0007	4534	11	11	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0008	4534	10	0	0	10	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0009	4533	8	5	2	0	1	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0010	4535	7	5	2	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0011	4533	7	7	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0012	4533	6	6	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0013	4535	6	5	1	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0014	4535	5	5	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0015	4534	4	1	3	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0016	4534	3	0	0	0	0	3	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0017	4535	3	3	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0018	4534	3	0	2	1	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0019	4535	3	0	0	3	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0020	4533	3	2	0	0	0	1	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0021	4533	2	0	2	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0022	4533	2	0	1	0	1	0	copy fasta	ZKSCAN2	chr16	25231001	25262845