JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZKSCAN2_chr16_25231001_25262845	0/0	t0023	4534	2	2	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0024	4535	2	0	0	2	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0025	4533	2	0	2	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0026	4534	2	2	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0027	4535	2	2	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0028	4535	1	1	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0029	4532	1	0	0	0	1	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0030	4532	1	0	0	0	1	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0031	4533	1	0	0	1	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0032	4534	1	0	1	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0033	4534	1	0	1	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0034	4534	1	1	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0035	4534	1	1	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0036	4534	1	0	0	1	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0037	4535	1	1	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0038	4535	1	0	0	1	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0039	4533	1	0	0	1	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0040	4534	1	0	0	1	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0041	4534	1	1	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0042	4535	1	1	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0043	4534	1	0	1	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0044	4534	1	0	0	0	0	1	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0045	4534	1	1	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0046	4534	1	1	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0047	4534	1	0	0	1	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0048	4534	1	1	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0049	4535	1	1	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0050	4534	1	0	0	1	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0051	4534	1	1	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN2_chr16_25231001_25262845	0/0	t0052	4535	1	1	0	0	0	0	copy fasta	ZKSCAN2	chr16	25231001	25262845
ZKSCAN3_chr6_28344947_28374172	0/0	t0001	3071	132	11	23	72	7	19	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/1	t0002	3063	107	43	16	35	4	8	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0003	3070	54	3	4	46	0	1	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0004	3067	25	0	4	17	1	3	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0005	3067	22	5	7	9	0	1	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0006	3071	17	11	2	2	0	2	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0007	3072	14	4	4	4	1	1	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0008	3071	5	2	3	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0009	3065	5	5	0	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0010	3064	5	0	4	0	1	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0011	3071	3	3	0	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0012	3070	2	2	0	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0013	3066	2	0	0	1	0	1	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	1/0	t0014	3071	1	0	0	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0015	3071	1	1	0	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0016	3072	1	1	0	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0017	3072	1	1	0	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0018	3071	1	0	0	1	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0019	3071	1	0	1	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0020	3070	1	0	0	1	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172