JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZKSCAN3_chr6_28344947_28374172	0/0	t0021	3072	1	0	0	1	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0022	3073	1	1	0	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0023	3071	1	1	0	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0024	3071	1	1	0	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0025	3071	1	0	0	0	0	1	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0026	3071	1	0	0	0	0	1	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0027	3087	1	0	1	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0028	3066	1	1	0	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0029	3062	1	0	0	1	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0030	3063	1	0	1	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0031	3063	1	1	0	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0032	3065	1	0	0	1	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0033	3066	1	0	0	1	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN3_chr6_28344947_28374172	0/0	t0034	3063	1	1	0	0	0	0	copy fasta	ZKSCAN3	chr6	28344947	28374172
ZKSCAN4_chr6_28236697_28257269	0/1	t0001	3709	154	35	21	80	6	11	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	1/0	t0002	3709	113	3	23	62	7	17	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0003	3706	51	10	8	30	0	3	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0004	3707	38	12	6	16	0	4	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0005	3707	8	2	5	0	1	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0006	3709	8	5	3	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0007	3706	5	5	0	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0008	3709	5	4	1	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0009	3713	3	0	0	3	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0010	3707	3	3	0	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0011	3707	3	3	0	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0012	3706	3	3	0	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0013	3707	3	0	0	3	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0014	3709	2	0	0	2	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0015	3709	2	0	1	0	0	1	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0016	3710	2	2	0	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0017	3707	2	2	0	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0018	3709	1	0	0	1	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0019	3709	1	0	0	1	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0020	3709	1	0	1	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0021	3709	1	0	1	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0022	3709	1	0	0	1	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0023	3709	1	0	0	1	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0024	3709	1	1	0	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0025	3708	1	1	0	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0026	3709	1	0	0	1	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0027	3709	1	0	1	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0028	3709	1	0	1	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0029	3709	1	0	0	1	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0030	3706	1	1	0	0	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0031	3709	1	0	0	1	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN4_chr6_28236697_28257269	0/0	t0032	3709	1	0	0	1	0	0	copy fasta	ZKSCAN4	chr6	28236697	28257269
ZKSCAN5_chr7_99499662_99539700	0/1	t0001	2563	61	2	12	29	6	11	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0002	2563	55	2	3	35	1	14	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0003	2564	52	29	4	12	2	5	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	1/0	t0004	2564	44	3	12	21	0	7	copy fasta	ZKSCAN5	chr7	99499662	99539700