JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZKSCAN5_chr7_99499662_99539700	0/0	t0005	2563	17	9	1	5	1	1	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0006	2562	15	13	2	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0007	2564	7	5	0	2	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0008	2565	5	4	0	1	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0009	2563	5	5	0	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0010	2565	4	3	1	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0011	2565	4	1	1	1	0	1	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0012	2564	4	0	3	0	1	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0013	2561	3	3	0	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0014	2562	3	3	0	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0015	2562	2	2	0	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0016	1490	2	0	0	2	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0017	2563	2	0	0	2	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0018	2564	2	0	0	2	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0019	2565	2	2	0	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0020	2565	2	1	1	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0021	2563	1	0	0	1	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0022	2563	1	0	0	1	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0023	2563	1	0	0	1	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0024	2564	1	0	0	1	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0025	1489	1	0	0	1	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0026	2563	1	0	1	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0027	2563	1	1	0	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0028	2563	1	1	0	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0029	2564	1	0	0	0	0	1	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0030	2564	1	0	1	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0031	2565	1	1	0	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0032	2563	1	0	0	1	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0033	2562	1	0	0	1	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0034	2564	1	0	1	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0035	2564	1	1	0	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0036	2564	1	0	0	0	1	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0037	2563	1	0	1	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0038	2563	1	1	0	0	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0039	2564	1	0	0	1	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0040	2563	1	0	0	1	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN5_chr7_99499662_99539700	0/0	t0041	2563	1	0	0	1	0	0	copy fasta	ZKSCAN5	chr7	99499662	99539700
ZKSCAN7_chr3_44550193_44577158	1/1	t0001	1191	243	49	48	98	12	34	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	t0002	1191	43	27	11	0	2	3	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	t0003	1191	18	15	2	0	1	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	t0004	1190	8	1	5	0	1	1	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	t0005	1191	3	3	0	0	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	t0006	1191	1	1	0	0	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	t0007	1191	1	0	0	0	0	1	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	t0008	1191	1	1	0	0	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	t0009	1191	1	0	0	0	0	1	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN7_chr3_44550193_44577158	0/0	t0010	1191	1	1	0	0	0	0	copy fasta	ZKSCAN7	chr3	44550193	44577158
ZKSCAN8_chr6_28136883_28164460	1/1	t0001	5683	193	26	28	98	12	27	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0002	5683	49	9	13	23	0	4	copy fasta	ZKSCAN8	chr6	28136883	28164460
ZKSCAN8_chr6_28136883_28164460	0/0	t0003	5683	46	21	4	18	0	3	copy fasta	ZKSCAN8	chr6	28136883	28164460