JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZMAT2_chr5_140695447_140711686	0/0	t0009	945	1	1	0	0	0	0	copy fasta	ZMAT2	chr5	140695447	140711686
ZMAT3_chr3_179012223_179076809	0/1	t0001	8087	14	2	5	5	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0002	8068	13	2	5	0	1	5	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0003	8067	7	0	2	4	1	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0004	8088	6	1	1	4	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0005	8086	6	0	4	0	2	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0006	8087	6	0	0	6	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	1/0	t0007	8067	5	0	1	0	0	3	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0008	8094	4	4	0	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0009	8087	4	0	0	4	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0010	8067	3	0	2	0	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0011	8067	3	0	1	1	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0012	8070	3	3	0	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0013	8087	3	2	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0014	8089	3	0	1	1	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0015	8088	3	0	2	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0016	8087	3	0	0	3	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0017	8085	3	0	2	0	1	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0018	8085	3	0	0	3	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0019	8067	3	0	3	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0020	8067	2	0	0	2	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0021	8104	2	2	0	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0022	8089	2	0	2	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0023	8095	2	1	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0024	8094	2	0	1	0	1	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0025	8070	2	0	0	1	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0026	8107	2	0	0	2	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0027	8112	2	0	2	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0028	8110	2	0	0	2	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0029	8104	2	0	2	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0030	8086	2	1	0	0	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0031	8103	2	0	0	2	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0032	8101	2	0	0	1	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0033	8091	2	1	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0034	8116	2	0	0	1	1	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0035	8103	2	1	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0036	8086	2	2	0	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0037	8087	2	0	1	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0038	8090	2	0	1	0	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0039	8090	2	2	0	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0040	8086	2	0	0	2	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0041	8085	2	2	0	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0042	8073	2	0	0	2	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0043	8065	2	0	0	2	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0044	8077	2	0	2	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0045	8108	1	0	0	0	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0046	8113	1	1	0	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0047	8088	1	0	0	0	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0048	8067	1	1	0	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0049	8070	1	0	0	0	0	1	copy fasta	ZMAT3	chr3	179012223	179076809