JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
ZMAT3_chr3_179012223_179076809	0/0	t0050	8070	1	0	0	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0051	8067	1	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0052	8068	1	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0053	8065	1	0	0	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0054	8089	1	0	0	1	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0055	8067	1	0	0	1	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0056	8090	1	0	0	1	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0057	8110	1	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0058	8103	1	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0059	8111	1	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0060	8096	1	0	0	1	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0061	8063	1	0	0	1	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0062	8106	1	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0063	8104	1	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0064	8101	1	0	0	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0065	8095	1	0	0	1	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0066	8098	1	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0067	8103	1	0	0	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0068	8117	1	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0069	8108	1	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0070	8096	1	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0071	8117	1	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0072	8087	1	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0073	8097	1	0	0	1	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0074	8097	1	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0075	8093	1	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0076	8091	1	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0077	8065	1	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0078	8100	1	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0079	8065	1	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0080	8095	1	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0081	8081	1	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0082	8086	1	0	0	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0083	8105	1	0	0	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0084	8079	1	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0085	8077	1	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0086	8065	1	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0087	8091	1	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0088	8118	1	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0089	8100	1	0	0	1	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0090	8098	1	0	0	1	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0091	8113	1	0	0	1	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0092	8099	1	0	0	1	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0093	8114	1	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0094	8118	1	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0095	8108	1	0	0	1	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0096	8102	1	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0097	8111	1	0	0	1	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0098	8105	1	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0099	8103	1	0	0	1	0	copy fasta	ZMAT3	chr3	179012223	179076809