JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZMAT3_chr3_179012223_179076809	0/0	t0150	8110	1	1	0	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0151	8111	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0152	8105	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0153	8097	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0154	8095	1	0	0	0	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0155	8091	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0156	8089	1	0	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0157	8087	1	0	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0158	8087	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0159	8077	1	0	0	0	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0160	8109	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0161	8110	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0162	8101	1	1	0	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0163	8090	1	1	0	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0164	8091	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0165	8088	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0166	8088	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0167	8092	1	0	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0168	8086	1	1	0	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0169	8084	1	0	0	0	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0170	8115	1	0	0	0	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0171	8089	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0172	8089	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0173	8088	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0174	8084	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0175	8085	1	0	0	0	1	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0176	8085	1	0	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0177	8108	1	0	0	0	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0178	8092	1	0	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0179	8094	1	1	0	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0180	8103	1	1	0	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0181	8093	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0182	8089	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0183	8085	1	1	0	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0184	8085	1	0	0	0	0	1	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0185	8085	1	0	0	0	1	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0186	8083	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0187	8087	1	1	0	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0188	8085	1	1	0	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0189	8083	1	1	0	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0190	8090	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0191	8084	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0192	8086	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0193	8086	1	0	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0194	8105	1	1	0	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0195	8095	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0196	8093	1	0	1	0	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0197	8089	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0198	8087	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809
ZMAT3_chr3_179012223_179076809	0/0	t0199	8085	1	0	0	1	0	0	copy fasta	ZMAT3	chr3	179012223	179076809