JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C1orf21_chr1_184382029_184634019	0/0	t0014	9928	2	0	2	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0015	9928	2	2	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0016	9928	2	2	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0017	9928	2	0	1	1	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0018	9928	2	2	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0019	9929	2	2	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0020	9928	2	0	0	2	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0021	9929	2	0	0	2	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0022	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0023	9928	1	0	1	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0024	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0025	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0026	9929	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0027	9929	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0028	9929	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0029	9929	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0030	9928	1	0	0	1	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0031	9928	1	0	1	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0032	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0033	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0034	9928	1	0	0	1	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0035	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0036	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0037	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0038	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0039	9928	1	0	0	1	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0040	9928	1	0	0	0	0	1	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0041	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/1	t0042	9928	1	0	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0043	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0044	9928	1	0	0	0	1	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0045	9928	1	0	0	1	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0046	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0047	9928	1	0	0	1	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0048	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0049	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0050	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0051	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0052	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0053	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0054	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0055	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0056	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0057	9929	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0058	9928	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0059	9928	1	0	0	1	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0060	9929	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0061	9929	1	0	1	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0062	9928	1	0	1	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	t0063	9928	1	0	0	0	0	1	copy fasta	C1orf21	chr1	184382029	184634019