JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZMAT4_chr8_40525590_40902826	1/0	t0001	1782	142	29	23	59	4	26	copy fasta	ZMAT4	chr8	40525590	40902826
ZMAT4_chr8_40525590_40902826	0/0	t0002	1782	36	23	8	2	0	3	copy fasta	ZMAT4	chr8	40525590	40902826
ZMAT4_chr8_40525590_40902826	0/1	t0003	1783	25	9	9	1	1	4	copy fasta	ZMAT4	chr8	40525590	40902826
ZMAT4_chr8_40525590_40902826	0/0	t0004	1780	10	8	2	0	0	0	copy fasta	ZMAT4	chr8	40525590	40902826
ZMAT4_chr8_40525590_40902826	0/0	t0005	1782	4	0	2	0	0	2	copy fasta	ZMAT4	chr8	40525590	40902826
ZMAT4_chr8_40525590_40902826	0/0	t0006	1782	2	0	0	2	0	0	copy fasta	ZMAT4	chr8	40525590	40902826
ZMAT4_chr8_40525590_40902826	0/0	t0007	1782	1	1	0	0	0	0	copy fasta	ZMAT4	chr8	40525590	40902826
ZMAT4_chr8_40525590_40902826	0/0	t0008	1783	1	1	0	0	0	0	copy fasta	ZMAT4	chr8	40525590	40902826
ZMAT4_chr8_40525590_40902826	0/0	t0009	1782	1	1	0	0	0	0	copy fasta	ZMAT4	chr8	40525590	40902826
ZMAT4_chr8_40525590_40902826	0/0	t0010	1783	1	1	0	0	0	0	copy fasta	ZMAT4	chr8	40525590	40902826
ZMAT4_chr8_40525590_40902826	0/0	t0011	1782	1	1	0	0	0	0	copy fasta	ZMAT4	chr8	40525590	40902826
ZMAT4_chr8_40525590_40902826	0/0	t0012	1782	1	1	0	0	0	0	copy fasta	ZMAT4	chr8	40525590	40902826
ZMAT4_chr8_40525590_40902826	0/0	t0013	1783	1	0	0	0	1	0	copy fasta	ZMAT4	chr8	40525590	40902826
ZMAT4_chr8_40525590_40902826	0/0	t0014	1780	1	1	0	0	0	0	copy fasta	ZMAT4	chr8	40525590	40902826
ZMAT4_chr8_40525590_40902826	0/0	t0015	1783	1	0	0	0	0	1	copy fasta	ZMAT4	chr8	40525590	40902826
ZMAT5_chr22_29725956_29772007	1/1	t0001	433	386	86	78	164	16	40	copy fasta	ZMAT5	chr22	29725956	29772007
ZMAT5_chr22_29725956_29772007	0/0	t0002	433	3	3	0	0	0	0	copy fasta	ZMAT5	chr22	29725956	29772007
ZMAT5_chr22_29725956_29772007	0/0	t0003	433	2	2	0	0	0	0	copy fasta	ZMAT5	chr22	29725956	29772007
ZMAT5_chr22_29725956_29772007	0/0	t0004	433	1	1	0	0	0	0	copy fasta	ZMAT5	chr22	29725956	29772007
ZMIZ1_chr10_79063966_79321519	0/0	t0001	4402	31	4	9	13	3	2	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/1	t0002	4412	26	4	8	8	2	3	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0003	4412	25	3	7	8	3	4	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0004	4412	14	1	4	7	1	1	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0005	4403	14	0	4	10	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	1/0	t0006	4412	11	2	0	5	0	3	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0007	4403	11	4	0	6	0	1	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0008	4412	10	0	4	5	0	1	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0009	4412	10	0	2	5	0	3	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0010	4402	8	3	1	1	0	3	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0011	4412	8	0	0	8	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0012	4413	6	6	0	0	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0013	4403	6	0	2	4	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0014	4412	6	0	3	3	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0015	4402	5	5	0	0	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0016	4412	5	0	3	1	0	1	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0017	4412	4	0	3	1	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0018	4412	4	0	2	2	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0019	4402	4	2	1	0	1	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0020	4403	3	0	0	3	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0021	4398	3	3	0	0	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0022	4403	3	0	1	2	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0023	4412	3	1	2	0	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0024	4402	2	2	0	0	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0025	4412	2	0	0	0	0	2	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0026	4400	2	0	0	0	1	1	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0027	4413	2	2	0	0	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0028	4412	2	1	1	0	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0029	4402	2	0	0	2	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0030	4402	2	0	0	1	0	1	copy fasta	ZMIZ1	chr10	79063966	79321519
ZMIZ1_chr10_79063966_79321519	0/0	t0031	4412	2	0	0	2	0	0	copy fasta	ZMIZ1	chr10	79063966	79321519