JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZMIZ2_chr7_44743847_44774881	0/0	t0002	2466	86	9	24	38	5	10	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/1	t0003	2466	12	0	5	2	0	4	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0004	2466	10	5	2	0	3	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0005	2466	9	9	0	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0006	2466	6	1	0	3	0	2	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0007	2463	5	0	0	5	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	1/0	t0008	2466	5	4	0	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0009	2466	4	2	2	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0010	2466	4	0	0	0	1	3	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0011	2466	4	3	1	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0012	2466	3	0	0	3	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0013	2466	3	0	3	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0014	2466	2	2	0	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0015	2456	2	2	0	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0016	2466	1	1	0	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0017	2495	1	0	0	1	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0018	2466	1	0	1	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0019	2466	1	0	0	1	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0020	2466	1	0	0	1	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0021	2466	1	1	0	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0022	2466	1	1	0	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0023	2466	1	0	1	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0024	2466	1	1	0	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0025	2466	1	0	0	1	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0026	2466	1	0	0	1	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0027	2466	1	1	0	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0028	2466	1	1	0	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0029	2466	1	0	0	1	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0030	2466	1	1	0	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0031	2466	1	1	0	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0032	2466	1	1	0	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0033	2466	1	0	0	1	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0034	2466	1	1	0	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0035	2466	1	1	0	0	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMIZ2_chr7_44743847_44774881	0/0	t0036	2466	1	0	0	1	0	0	copy fasta	ZMIZ2	chr7	44743847	44774881
ZMPSTE24_chr1_40253236_40299180	1/1	t0001	1548	313	83	38	143	14	33	copy fasta	ZMPSTE24	chr1	40253236	40299180
ZMPSTE24_chr1_40253236_40299180	0/0	t0002	1548	69	7	12	35	2	13	copy fasta	ZMPSTE24	chr1	40253236	40299180
ZMPSTE24_chr1_40253236_40299180	0/0	t0003	1548	5	1	0	3	0	1	copy fasta	ZMPSTE24	chr1	40253236	40299180
ZMPSTE24_chr1_40253236_40299180	0/0	t0004	1548	4	4	0	0	0	0	copy fasta	ZMPSTE24	chr1	40253236	40299180
ZMPSTE24_chr1_40253236_40299180	0/0	t0005	1548	1	1	0	0	0	0	copy fasta	ZMPSTE24	chr1	40253236	40299180
ZMPSTE24_chr1_40253236_40299180	0/0	t0006	1548	1	0	0	0	0	1	copy fasta	ZMPSTE24	chr1	40253236	40299180
ZMPSTE24_chr1_40253236_40299180	0/0	t0007	1548	1	0	0	1	0	0	copy fasta	ZMPSTE24	chr1	40253236	40299180
ZMYM1_chr1_35074385_35120859	0/0	t0001	734	166	41	32	65	6	22	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/1	t0002	735	97	26	17	47	1	5	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	t0003	735	76	4	3	64	2	3	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	t0004	730	14	13	1	0	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	t0005	734	11	8	3	0	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	t0006	734	2	0	0	0	0	2	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	t0007	734	1	0	0	1	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	t0008	734	1	0	0	1	0	0	copy fasta	ZMYM1	chr1	35074385	35120859