JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZMYM1_chr1_35074385_35120859	0/0	t0009	736	1	0	0	1	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	t0010	735	1	1	0	0	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	t0011	734	1	0	0	0	1	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	t0012	734	1	1	0	0	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	1/0	t0013	733	1	0	0	0	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM1_chr1_35074385_35120859	0/0	t0014	734	1	0	0	1	0	0	copy fasta	ZMYM1	chr1	35074385	35120859
ZMYM2_chr13_19953727_20094115	0/1	t0001	3298	125	9	18	79	7	11	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0002	3296	44	14	8	11	5	6	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0003	3294	31	19	5	1	0	6	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0004	3300	27	6	3	15	0	3	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0005	3298	10	1	5	0	0	4	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0006	3294	7	6	1	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0007	3294	3	3	0	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0008	3296	3	2	1	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0009	3298	3	1	0	0	1	1	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0010	3296	2	2	0	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0011	3295	2	1	1	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0012	3294	2	1	1	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0013	3294	2	0	0	0	0	2	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0014	3295	2	2	0	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0015	3297	2	2	0	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0016	3299	2	1	1	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0017	3296	2	1	1	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0018	3294	1	1	0	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0019	3294	1	1	0	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	1/0	t0020	3296	1	0	0	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0021	3298	1	1	0	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0022	3294	1	1	0	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0023	3295	1	1	0	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0024	3294	1	0	0	0	1	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0025	3296	1	1	0	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0026	3296	1	0	0	0	0	1	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0027	3297	1	1	0	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0028	3298	1	0	1	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0029	3298	1	0	0	1	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0030	3298	1	0	0	1	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0031	3299	1	1	0	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0032	3296	1	1	0	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0033	3298	1	0	1	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM2_chr13_19953727_20094115	0/0	t0034	3300	1	0	1	0	0	0	copy fasta	ZMYM2	chr13	19953727	20094115
ZMYM3_chrX_71234624_71259140	1/1	t0001	1424	229	41	54	98	11	23	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	t0002	1424	40	7	4	20	2	7	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	t0003	1424	23	22	1	0	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	t0004	1424	2	0	0	2	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	t0005	1426	1	0	0	1	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	t0006	1423	1	0	0	1	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	t0007	1423	1	0	0	1	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	t0008	1425	1	0	0	1	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	t0009	1424	1	0	1	0	0	0	copy fasta	ZMYM3	chrX	71234624	71259140
ZMYM3_chrX_71234624_71259140	0/0	t0010	1424	1	0	1	0	0	0	copy fasta	ZMYM3	chrX	71234624	71259140