JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZMYM4_chr1_35263709_35427058	1/1	t0001	2720	253	75	41	113	6	16	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	t0002	2721	16	0	0	13	0	3	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	t0003	2720	8	6	1	0	0	1	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	t0004	2721	8	8	0	0	0	0	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	t0005	2720	1	0	1	0	0	0	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	t0006	2720	1	0	0	0	0	1	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	t0007	2720	1	1	0	0	0	0	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	t0008	2720	1	0	0	1	0	0	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	t0009	2720	1	0	0	0	0	1	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	t0010	2720	1	0	0	1	0	0	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	t0011	2720	1	1	0	0	0	0	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	t0012	2720	1	0	0	1	0	0	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	t0013	2720	1	0	0	1	0	0	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	t0014	2720	1	0	0	1	0	0	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	t0015	2721	1	1	0	0	0	0	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	t0016	2720	1	0	1	0	0	0	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM4_chr1_35263709_35427058	0/0	t0017	2720	1	0	0	1	0	0	copy fasta	ZMYM4	chr1	35263709	35427058
ZMYM5_chr13_19818482_19868649	0/0	t0001	1274	178	30	51	64	11	22	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	1/0	t0002	1274	40	35	2	1	0	1	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	t0003	1274	34	12	4	13	2	3	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/1	t0004	1274	32	6	13	3	3	6	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	t0005	1274	8	8	0	0	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	t0006	1274	3	3	0	0	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM5_chr13_19818482_19868649	0/0	t0007	1274	1	0	0	1	0	0	copy fasta	ZMYM5	chr13	19818482	19868649
ZMYM6_chr1_34981165_35036945	0/0	t0001	1145	166	79	13	68	0	6	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	1/1	t0002	1145	135	20	19	72	4	18	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	t0003	1145	3	0	0	3	0	0	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	t0004	1144	3	0	0	1	2	0	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	t0005	1145	1	0	0	1	0	0	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	t0006	1145	1	0	0	1	0	0	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYM6_chr1_34981165_35036945	0/0	t0007	1145	1	1	0	0	0	0	copy fasta	ZMYM6	chr1	34981165	35036945
ZMYND10_chr3_50336112_50350732	1/1	t0001	452	243	64	51	78	13	35	copy fasta	ZMYND10	chr3	50336112	50350732
ZMYND10_chr3_50336112_50350732	0/0	t0002	452	109	19	17	72	0	1	copy fasta	ZMYND10	chr3	50336112	50350732
ZMYND10_chr3_50336112_50350732	0/0	t0003	452	4	4	0	0	0	0	copy fasta	ZMYND10	chr3	50336112	50350732
ZMYND10_chr3_50336112_50350732	0/0	t0004	452	2	0	0	2	0	0	copy fasta	ZMYND10	chr3	50336112	50350732
ZMYND10_chr3_50336112_50350732	0/0	t0005	452	1	0	0	1	0	0	copy fasta	ZMYND10	chr3	50336112	50350732
ZMYND10_chr3_50336112_50350732	0/0	t0006	452	1	0	0	0	1	0	copy fasta	ZMYND10	chr3	50336112	50350732
ZMYND10_chr3_50336112_50350732	0/0	t0007	452	1	1	0	0	0	0	copy fasta	ZMYND10	chr3	50336112	50350732
ZMYND10_chr3_50336112_50350732	0/0	t0008	452	1	0	0	1	0	0	copy fasta	ZMYND10	chr3	50336112	50350732
ZMYND11_chr10_130455_259637	1/1	t0001	2292	329	78	58	141	14	36	copy fasta	ZMYND11	chr10	130455	259637
ZMYND11_chr10_130455_259637	0/0	t0002	2292	2	1	1	0	0	0	copy fasta	ZMYND11	chr10	130455	259637
ZMYND11_chr10_130455_259637	0/0	t0003	2292	2	0	2	0	0	0	copy fasta	ZMYND11	chr10	130455	259637
ZMYND11_chr10_130455_259637	0/0	t0004	2292	2	2	0	0	0	0	copy fasta	ZMYND11	chr10	130455	259637
ZMYND11_chr10_130455_259637	0/0	t0005	2292	2	0	0	2	0	0	copy fasta	ZMYND11	chr10	130455	259637
ZMYND11_chr10_130455_259637	0/0	t0006	2292	1	1	0	0	0	0	copy fasta	ZMYND11	chr10	130455	259637
ZMYND11_chr10_130455_259637	0/0	t0007	2292	1	0	1	0	0	0	copy fasta	ZMYND11	chr10	130455	259637
ZMYND11_chr10_130455_259637	0/0	t0008	2292	1	0	0	1	0	0	copy fasta	ZMYND11	chr10	130455	259637
ZMYND11_chr10_130455_259637	0/0	t0009	2292	1	0	0	1	0	0	copy fasta	ZMYND11	chr10	130455	259637
ZMYND11_chr10_130455_259637	0/0	t0010	2292	1	0	0	1	0	0	copy fasta	ZMYND11	chr10	130455	259637
ZMYND12_chr1_42425329_42461022	1/1	t0001	433	388	89	74	165	12	46	copy fasta	ZMYND12	chr1	42425329	42461022