JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZMYND12_chr1_42425329_42461022	0/0	t0002	422	1	0	0	1	0	0	copy fasta	ZMYND12	chr1	42425329	42461022
ZMYND12_chr1_42425329_42461022	0/0	t0003	433	1	1	0	0	0	0	copy fasta	ZMYND12	chr1	42425329	42461022
ZMYND15_chr17_4734833_4751113	1/1	t0001	372	391	91	66	171	16	45	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	t0002	372	65	6	14	40	0	5	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	t0003	372	1	0	0	1	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND15_chr17_4734833_4751113	0/0	t0004	372	1	1	0	0	0	0	copy fasta	ZMYND15	chr17	4734833	4751113
ZMYND19_chr9_137577081_137595512	1/1	t0001	712	272	59	65	95	16	35	copy fasta	ZMYND19	chr9	137577081	137595512
ZMYND19_chr9_137577081_137595512	0/0	t0002	712	25	22	0	0	0	3	copy fasta	ZMYND19	chr9	137577081	137595512
ZMYND19_chr9_137577081_137595512	0/0	t0003	713	9	2	3	3	0	1	copy fasta	ZMYND19	chr9	137577081	137595512
ZMYND19_chr9_137577081_137595512	0/0	t0004	708	7	7	0	0	0	0	copy fasta	ZMYND19	chr9	137577081	137595512
ZMYND19_chr9_137577081_137595512	0/0	t0005	712	6	0	0	6	0	0	copy fasta	ZMYND19	chr9	137577081	137595512
ZMYND19_chr9_137577081_137595512	0/0	t0006	712	4	4	0	0	0	0	copy fasta	ZMYND19	chr9	137577081	137595512
ZMYND19_chr9_137577081_137595512	0/0	t0007	712	2	2	0	0	0	0	copy fasta	ZMYND19	chr9	137577081	137595512
ZMYND19_chr9_137577081_137595512	0/0	t0008	709	1	0	1	0	0	0	copy fasta	ZMYND19	chr9	137577081	137595512
ZMYND19_chr9_137577081_137595512	0/0	t0009	712	1	0	1	0	0	0	copy fasta	ZMYND19	chr9	137577081	137595512
ZMYND19_chr9_137577081_137595512	0/0	t0010	712	1	0	0	0	0	1	copy fasta	ZMYND19	chr9	137577081	137595512
ZMYND8_chr20_47204214_47361699	1/1	t0001	1577	56	3	14	25	2	10	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0002	1576	51	35	7	5	0	4	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0003	1576	32	1	11	14	2	4	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0004	1575	19	16	3	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0005	1576	17	8	6	2	0	1	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0006	1576	4	4	0	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0007	1573	3	3	0	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0008	1575	3	0	0	1	2	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0009	1574	2	2	0	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0010	1573	2	2	0	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0011	1576	2	0	0	2	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0012	1576	2	1	1	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0013	1576	1	0	0	0	0	1	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0014	1574	1	1	0	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0015	1575	1	1	0	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0016	1576	1	0	0	0	1	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0017	1577	1	1	0	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0018	1576	1	0	1	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0019	1576	1	1	0	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0020	1575	1	1	0	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0021	1577	1	1	0	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0022	1577	1	0	0	1	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0023	1576	1	0	0	0	1	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0024	1576	1	0	1	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0025	1577	1	1	0	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0026	1576	1	1	0	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZMYND8_chr20_47204214_47361699	0/0	t0027	1576	1	1	0	0	0	0	copy fasta	ZMYND8	chr20	47204214	47361699
ZNF100_chr19_21717771_21772579	0/0	t0001	4061	88	23	12	48	2	3	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0002	4056	35	4	5	16	3	7	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0003	4066	32	0	4	24	2	2	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0004	4064	21	0	4	8	2	7	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0005	4061	20	4	5	10	1	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/1	t0006	4062	17	2	3	8	0	3	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0007	4060	16	0	0	15	1	0	copy fasta	ZNF100	chr19	21717771	21772579