JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF100_chr19_21717771_21772579	0/0	t0008	4067	12	3	6	0	0	3	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0009	4056	12	0	5	7	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0010	4062	11	1	5	2	0	3	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0011	4067	9	1	0	7	0	1	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0012	4060	8	4	3	0	1	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0013	4068	6	5	1	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0014	4063	6	6	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0015	4067	4	4	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0016	4066	3	3	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0017	4060	3	3	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0018	4068	3	1	2	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0019	4057	3	0	1	1	0	1	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0020	4063	3	1	2	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0021	4068	2	2	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0022	4060	2	1	0	1	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0023	4066	2	2	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0024	4059	2	0	0	2	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0025	4061	2	0	0	2	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0026	4063	2	1	0	0	1	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0027	4065	2	1	0	1	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0028	4064	2	2	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0029	4065	1	0	1	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0030	4067	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0031	4069	1	0	0	1	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0032	4061	1	0	1	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0033	4062	1	0	0	1	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0034	4062	1	0	0	1	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0035	4061	1	0	0	1	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0036	4061	1	0	1	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0037	4061	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0038	4061	1	0	0	0	0	1	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0039	4061	1	0	0	0	0	1	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0040	4061	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0041	4061	1	0	0	1	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0042	4068	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0043	4066	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0044	4067	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0045	4067	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0046	4067	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0047	4065	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0048	4061	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0049	4064	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0050	4055	1	0	0	0	1	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0051	4056	1	0	0	1	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0052	4056	1	0	0	1	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0053	4066	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0054	4066	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0055	4061	1	0	0	1	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0056	4066	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0057	4061	1	0	1	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579