JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF100_chr19_21717771_21772579	0/0	t0058	4061	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0059	4061	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0060	4061	1	0	1	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0061	4067	1	0	0	1	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0062	4067	1	0	0	1	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0063	4064	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0064	4063	1	0	1	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF100_chr19_21717771_21772579	0/0	t0065	4063	1	1	0	0	0	0	copy fasta	ZNF100	chr19	21717771	21772579
ZNF101_chr19_19663839_19688506	0/0	t0001	3332	100	35	13	31	2	19	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	1/1	t0002	3332	73	7	14	38	5	7	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0003	3332	53	16	12	19	2	4	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0004	3333	29	10	9	0	2	8	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0005	3333	25	0	8	16	0	1	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0006	3332	16	0	1	15	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0007	3332	6	5	1	0	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0008	3332	5	1	0	0	0	4	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0009	3332	5	5	0	0	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0010	3334	4	4	0	0	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0011	3332	4	0	0	4	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0012	3332	4	4	0	0	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0013	3334	3	0	0	3	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0014	3332	3	3	0	0	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0015	3332	3	1	0	1	1	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0016	3333	3	0	0	3	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0017	3334	3	0	1	0	0	2	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0018	3332	3	0	0	3	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0019	3333	2	1	1	0	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0020	3332	1	0	0	0	0	1	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0021	3332	1	0	0	1	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0022	3333	1	0	0	1	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0023	3332	1	0	0	0	0	1	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0024	3332	1	0	0	1	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0025	3343	1	0	1	0	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0026	3333	1	0	0	0	1	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0027	3332	1	1	0	0	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0028	3332	1	0	0	1	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0029	3332	1	0	0	0	0	1	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0030	3332	1	0	1	0	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0031	3332	1	0	1	0	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0032	3333	1	0	0	1	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0033	3333	1	0	0	1	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0034	3332	1	1	0	0	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0035	3332	1	0	0	1	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0036	3332	1	0	1	0	0	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0037	3332	1	0	0	0	0	1	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0038	3332	1	0	0	0	1	0	copy fasta	ZNF101	chr19	19663839	19688506
ZNF101_chr19_19663839_19688506	0/0	t0039	3332	1	0	0	0	0	1	copy fasta	ZNF101	chr19	19663839	19688506
ZNF106_chr15_42407823_42496141	0/1	t0001	4676	78	3	22	39	2	11	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	t0002	4673	32	19	7	0	2	4	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	t0003	4674	25	0	10	10	0	5	copy fasta	ZNF106	chr15	42407823	42496141