JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF106_chr15_42407823_42496141	0/0	t0054	4677	1	1	0	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF106_chr15_42407823_42496141	0/0	t0055	4673	1	0	1	0	0	0	copy fasta	ZNF106	chr15	42407823	42496141
ZNF107_chr7_64661133_64716577	0/1	t0001	3076	147	15	31	76	9	15	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0002	3076	65	0	9	49	2	5	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	1/0	t0003	3072	46	5	8	25	1	6	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0004	3074	37	0	5	31	0	1	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0005	3076	36	17	2	17	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0006	3076	18	18	0	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0007	3075	16	15	1	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0008	3076	12	11	1	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0009	3076	4	0	0	4	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0010	3076	4	0	2	0	0	2	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0011	3076	4	0	4	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0012	3075	4	4	0	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0013	3076	3	0	3	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0014	3076	2	2	0	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0015	3076	2	2	0	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0016	3076	2	2	0	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0017	3072	2	1	1	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0018	3076	2	2	0	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0019	3075	1	0	1	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0020	3076	1	0	1	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0021	3076	1	0	0	0	0	1	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0022	3076	1	0	0	1	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0023	3076	1	0	1	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0024	3076	1	0	0	0	0	1	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0025	3076	1	0	0	0	0	1	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0026	3076	1	0	0	0	0	1	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0027	3076	1	0	0	0	0	1	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0028	3075	1	1	0	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0029	3076	1	1	0	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0030	3074	1	0	1	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0031	3076	1	0	0	1	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0032	3072	1	1	0	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0033	3076	1	1	0	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF107_chr7_64661133_64716577	0/0	t0034	3074	1	0	1	0	0	0	copy fasta	ZNF107	chr7	64661133	64716577
ZNF10_chr12_133125627_133164465	1/1	t0001	2685	229	47	56	91	6	27	copy fasta	ZNF10	chr12	133125627	133164465
ZNF10_chr12_133125627_133164465	0/0	t0002	2685	35	1	5	16	4	9	copy fasta	ZNF10	chr12	133125627	133164465
ZNF10_chr12_133125627_133164465	0/0	t0003	2685	21	18	2	0	0	1	copy fasta	ZNF10	chr12	133125627	133164465
ZNF10_chr12_133125627_133164465	0/0	t0004	2685	8	8	0	0	0	0	copy fasta	ZNF10	chr12	133125627	133164465
ZNF10_chr12_133125627_133164465	0/0	t0005	2685	6	6	0	0	0	0	copy fasta	ZNF10	chr12	133125627	133164465
ZNF10_chr12_133125627_133164465	0/0	t0006	2685	6	0	2	0	1	3	copy fasta	ZNF10	chr12	133125627	133164465
ZNF10_chr12_133125627_133164465	0/0	t0007	2685	4	4	0	0	0	0	copy fasta	ZNF10	chr12	133125627	133164465
ZNF10_chr12_133125627_133164465	0/0	t0008	2685	4	4	0	0	0	0	copy fasta	ZNF10	chr12	133125627	133164465
ZNF10_chr12_133125627_133164465	0/0	t0009	2685	4	2	2	0	0	0	copy fasta	ZNF10	chr12	133125627	133164465
ZNF10_chr12_133125627_133164465	0/0	t0010	2685	2	2	0	0	0	0	copy fasta	ZNF10	chr12	133125627	133164465
ZNF10_chr12_133125627_133164465	0/0	t0011	2685	2	0	0	2	0	0	copy fasta	ZNF10	chr12	133125627	133164465
ZNF10_chr12_133125627_133164465	0/0	t0012	2685	1	1	0	0	0	0	copy fasta	ZNF10	chr12	133125627	133164465
ZNF10_chr12_133125627_133164465	0/0	t0013	2685	1	1	0	0	0	0	copy fasta	ZNF10	chr12	133125627	133164465
ZNF10_chr12_133125627_133164465	0/0	t0014	2685	1	0	1	0	0	0	copy fasta	ZNF10	chr12	133125627	133164465