JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF117_chr7_64966772_64996036	0/0	t0018	7633	3	3	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0019	7620	3	3	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0020	7621	3	0	0	2	0	1	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0021	7545	2	2	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0022	7629	2	0	2	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0023	7620	2	0	0	2	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0024	7620	2	0	0	2	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0025	7620	2	0	0	2	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0026	7620	2	0	0	0	0	2	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0027	7625	2	2	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0028	7633	1	1	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0029	7629	1	0	0	1	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0030	7629	1	0	1	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0031	7628	1	0	0	1	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0032	7624	1	0	0	1	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0033	7629	1	1	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0034	7628	1	1	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0035	7628	1	1	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0036	7628	1	0	1	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0037	7629	1	0	1	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0038	7629	1	0	0	1	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0039	7629	1	0	1	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0040	7629	1	0	1	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0041	7629	1	0	0	0	0	1	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0042	7629	1	0	1	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0043	7631	1	0	0	0	0	1	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0044	7629	1	1	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0045	7629	1	0	1	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0046	7461	1	0	1	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0047	7633	1	1	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0048	7633	1	1	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0049	7620	1	0	0	1	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0050	7620	1	0	0	0	0	1	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0051	7620	1	0	0	0	0	1	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0052	7620	1	0	0	1	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0053	7620	1	0	0	0	1	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0054	7620	1	0	1	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0055	7626	1	1	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0056	7626	1	1	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0057	7626	1	1	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0058	7626	1	0	1	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0059	7626	1	1	0	0	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0060	7620	1	0	0	1	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0061	7620	1	0	0	1	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0062	7620	1	0	0	0	0	1	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0063	7631	1	0	0	1	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0064	7631	1	0	0	1	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0065	7631	1	0	0	1	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0066	7631	1	0	0	1	0	0	copy fasta	ZNF117	chr7	64966772	64996036
ZNF117_chr7_64966772_64996036	0/0	t0067	7631	1	0	0	1	0	0	copy fasta	ZNF117	chr7	64966772	64996036