JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF121_chr19_9555329_9589504	0/0	t0151	5818	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0152	5818	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0153	5820	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0154	5820	1	0	0	0	0	1	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0155	5818	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0156	5820	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0157	5821	1	0	0	0	0	1	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0158	5820	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0159	5823	1	0	0	0	0	1	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0160	5821	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0161	5822	1	0	0	0	0	1	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0162	5821	1	0	0	0	1	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0163	5823	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0164	5821	1	0	0	0	0	1	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0165	5822	1	0	1	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0166	5814	1	0	1	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0167	5824	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0168	5823	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0169	5822	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0170	5827	1	0	1	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0171	5826	1	0	1	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0172	5827	1	0	1	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0173	5829	1	0	0	0	0	1	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0174	5828	1	0	1	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0175	5827	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0176	5817	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0177	5805	1	0	0	0	0	1	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0178	5791	1	1	0	0	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0179	5801	1	0	0	0	1	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0180	5807	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF121_chr19_9555329_9589504	0/0	t0181	5818	1	0	0	1	0	0	copy fasta	ZNF121	chr19	9555329	9589504
ZNF124_chr1_247149989_247177020	1/1	t0001	1721	141	8	33	82	4	12	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0002	1721	55	1	5	43	1	5	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0003	1722	38	11	5	15	0	7	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0004	1722	27	5	0	20	0	2	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0005	1720	22	8	13	0	0	1	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0006	1720	15	0	3	2	1	9	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0007	1722	12	0	6	0	4	2	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0008	1721	10	8	1	0	1	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0009	1718	9	8	1	0	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0010	1720	9	7	2	0	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0011	1719	8	8	0	0	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0012	1721	5	0	0	5	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0013	1719	4	0	1	0	1	2	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0014	1720	4	0	4	0	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0015	1720	4	3	1	0	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0016	1722	3	0	0	0	0	3	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0017	1721	3	0	1	0	2	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0018	1721	2	2	0	0	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0019	1722	2	0	0	0	0	2	copy fasta	ZNF124	chr1	247149989	247177020