JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF124_chr1_247149989_247177020	0/0	t0020	1721	2	1	1	0	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0021	1721	2	2	0	0	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0022	1722	2	2	0	0	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0023	1720	1	0	0	1	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0024	1721	1	0	0	0	1	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0025	1721	1	0	0	0	0	1	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0026	1722	1	0	1	0	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0027	1721	1	0	0	1	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0028	1720	1	1	0	0	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0029	1720	1	1	0	0	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0030	1718	1	1	0	0	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0031	1722	1	1	0	0	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0032	1721	1	1	0	0	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0033	1721	1	0	0	0	1	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0034	1718	1	1	0	0	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0035	1722	1	1	0	0	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0036	1721	1	0	0	1	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0037	1720	1	0	0	1	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0038	1722	1	0	0	1	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0039	1719	1	1	0	0	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0040	1720	1	1	0	0	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF124_chr1_247149989_247177020	0/0	t0041	1722	1	1	0	0	0	0	copy fasta	ZNF124	chr1	247149989	247177020
ZNF12_chr7_6683433_6711947	1/0	t0001	2982	197	31	43	91	5	26	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0002	2987	98	28	14	48	2	6	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/1	t0003	2987	17	4	5	0	2	5	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0004	2987	11	9	2	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0005	2982	9	0	0	9	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0006	2987	7	0	4	0	3	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0007	2981	6	6	0	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0008	2982	5	4	1	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0009	2987	3	2	1	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0010	2987	3	3	0	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0011	2987	3	0	0	3	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0012	2987	3	3	0	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0013	2987	2	2	0	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0014	2982	2	2	0	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0015	2982	2	0	2	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0016	2982	2	0	0	2	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0017	2982	1	0	0	1	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0018	2987	1	1	0	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0019	2982	1	1	0	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0020	2982	1	0	0	0	0	1	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0021	2982	1	0	0	1	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0022	2982	1	0	0	1	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0023	2987	1	0	0	1	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0024	2987	1	1	0	0	0	0	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0025	2982	1	0	0	0	0	1	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0026	2982	1	0	0	0	0	1	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0027	2982	1	0	0	0	0	1	copy fasta	ZNF12	chr7	6683433	6711947
ZNF12_chr7_6683433_6711947	0/0	t0028	2982	1	0	0	1	0	0	copy fasta	ZNF12	chr7	6683433	6711947