JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF134_chr19_57609242_57629724	0/0	t0007	3637	10	4	2	2	2	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0008	3630	10	10	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0009	3633	7	0	1	2	0	4	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0010	3630	5	5	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0011	3627	4	4	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0012	3639	4	0	0	4	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0013	3633	3	1	2	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0014	3631	3	3	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0015	3639	2	0	0	0	0	2	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0016	3628	2	2	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0017	3627	2	2	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0018	3639	2	0	0	2	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0019	3633	2	2	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0020	3630	2	0	0	1	0	1	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0021	3639	2	0	1	0	1	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0022	3639	1	0	1	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0023	3625	1	1	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0024	3639	1	0	0	1	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0025	3637	1	0	0	0	1	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0026	3641	1	0	0	0	0	1	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0027	3641	1	0	0	1	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0028	3641	1	1	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0029	3637	1	0	0	1	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0030	3631	1	1	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0031	3630	1	1	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0032	3639	1	1	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0033	3637	1	1	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0034	3633	1	0	0	1	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0035	3629	1	1	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0036	3641	1	1	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0037	3639	1	0	0	1	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0038	3641	1	0	1	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0039	3643	1	1	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0040	3633	1	1	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0041	3633	1	1	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0042	3629	1	1	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0043	3630	1	0	1	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0044	3626	1	0	0	1	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0045	3633	1	1	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0046	3637	1	1	0	0	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0047	3635	1	0	0	1	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0048	3633	1	0	0	1	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0049	3631	1	0	0	1	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0050	3633	1	0	0	0	0	1	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0051	3633	1	0	0	0	0	1	copy fasta	ZNF134	chr19	57609242	57629724
ZNF134_chr19_57609242_57629724	0/0	t0052	3633	1	0	0	1	0	0	copy fasta	ZNF134	chr19	57609242	57629724
ZNF135_chr19_58054282_58074755	0/1	t0001	1361	143	26	30	63	8	15	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	1/0	t0002	1358	126	34	14	68	0	9	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	t0003	1358	101	13	15	60	3	10	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	t0004	1361	11	0	4	7	0	0	copy fasta	ZNF135	chr19	58054282	58074755