JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C1orf226_chr1_162376728_162391812	0/0	t0044	3304	1	0	0	0	0	1	copy fasta	C1orf226	chr1	162376728	162391812
C1orf226_chr1_162376728_162391812	0/0	t0045	3304	1	0	0	0	0	1	copy fasta	C1orf226	chr1	162376728	162391812
C1orf226_chr1_162376728_162391812	0/0	t0046	3304	1	0	0	1	0	0	copy fasta	C1orf226	chr1	162376728	162391812
C1orf226_chr1_162376728_162391812	0/0	t0047	3304	1	0	0	1	0	0	copy fasta	C1orf226	chr1	162376728	162391812
C1orf226_chr1_162376728_162391812	0/0	t0048	3304	1	0	0	1	0	0	copy fasta	C1orf226	chr1	162376728	162391812
C1orf232_chr1_26159101_26173963	1/1	t0001	525	385	87	79	162	14	41	copy fasta	C1orf232	chr1	26159101	26173963
C1orf232_chr1_26159101_26173963	0/0	t0002	525	5	5	0	0	0	0	copy fasta	C1orf232	chr1	26159101	26173963
C1orf232_chr1_26159101_26173963	0/0	t0003	525	5	4	1	0	0	0	copy fasta	C1orf232	chr1	26159101	26173963
C1orf232_chr1_26159101_26173963	0/0	t0004	525	2	0	0	2	0	0	copy fasta	C1orf232	chr1	26159101	26173963
C1orf232_chr1_26159101_26173963	0/0	t0005	525	2	0	0	1	0	1	copy fasta	C1orf232	chr1	26159101	26173963
C1orf232_chr1_26159101_26173963	0/0	t0006	525	1	0	0	1	0	0	copy fasta	C1orf232	chr1	26159101	26173963
C1orf35_chr1_228095731_228108325	1/1	t0001	499	409	90	67	194	14	42	copy fasta	C1orf35	chr1	228095731	228108325
C1orf35_chr1_228095731_228108325	0/0	t0002	499	3	3	0	0	0	0	copy fasta	C1orf35	chr1	228095731	228108325
C1orf35_chr1_228095731_228108325	0/0	t0003	499	3	0	0	3	0	0	copy fasta	C1orf35	chr1	228095731	228108325
C1orf35_chr1_228095731_228108325	0/0	t0004	499	2	0	2	0	0	0	copy fasta	C1orf35	chr1	228095731	228108325
C1orf35_chr1_228095731_228108325	0/0	t0005	499	1	1	0	0	0	0	copy fasta	C1orf35	chr1	228095731	228108325
C1orf35_chr1_228095731_228108325	0/0	t0006	499	1	0	0	1	0	0	copy fasta	C1orf35	chr1	228095731	228108325
C1orf35_chr1_228095731_228108325	0/0	t0007	499	1	0	1	0	0	0	copy fasta	C1orf35	chr1	228095731	228108325
C1orf43_chr1_154201720_154225590	0/0	t0001	917	173	24	37	87	4	21	copy fasta	C1orf43	chr1	154201720	154225590
C1orf43_chr1_154201720_154225590	1/0	t0002	917	155	33	27	71	6	17	copy fasta	C1orf43	chr1	154201720	154225590
C1orf43_chr1_154201720_154225590	0/0	t0003	916	37	35	2	0	0	0	copy fasta	C1orf43	chr1	154201720	154225590
C1orf43_chr1_154201720_154225590	0/0	t0004	917	2	0	2	0	0	0	copy fasta	C1orf43	chr1	154201720	154225590
C1orf43_chr1_154201720_154225590	0/0	t0005	917	2	0	0	2	0	0	copy fasta	C1orf43	chr1	154201720	154225590
C1orf43_chr1_154201720_154225590	0/0	t0006	916	1	1	0	0	0	0	copy fasta	C1orf43	chr1	154201720	154225590
C1orf43_chr1_154201720_154225590	0/1	t0007	917	1	0	0	0	0	0	copy fasta	C1orf43	chr1	154201720	154225590
C1orf43_chr1_154201720_154225590	0/0	t0008	917	1	1	0	0	0	0	copy fasta	C1orf43	chr1	154201720	154225590
C1orf43_chr1_154201720_154225590	0/0	t0009	917	1	0	0	1	0	0	copy fasta	C1orf43	chr1	154201720	154225590
C1orf43_chr1_154201720_154225590	0/0	t0010	917	1	0	0	1	0	0	copy fasta	C1orf43	chr1	154201720	154225590
C1orf50_chr1_42762249_42784491	0/0	t0001	4161	58	13	6	35	2	2	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0002	4158	52	4	10	34	2	2	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0003	4159	23	3	8	5	2	5	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	1/0	t0004	4161	21	0	7	13	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0005	4160	20	0	0	20	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0006	4162	18	5	0	12	0	1	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0007	4160	15	7	1	3	1	3	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0008	4163	12	1	6	0	3	2	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0009	4159	10	0	3	6	0	1	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0010	4158	9	4	2	1	0	2	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0011	4160	7	0	0	7	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0012	4160	6	2	0	3	1	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0013	4161	6	6	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0014	4155	5	5	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0015	4157	5	3	1	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0016	4163	5	2	1	2	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0017	4173	4	4	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0018	4162	4	0	2	1	0	1	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0019	4153	4	0	0	4	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0020	4154	4	0	0	4	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0021	4160	4	0	0	4	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0022	4159	4	0	0	3	1	0	copy fasta	C1orf50	chr1	42762249	42784491