JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF135_chr19_58054282_58074755	0/0	t0005	1360	9	3	2	2	2	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	t0006	1358	8	0	4	1	0	3	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	t0007	1357	5	5	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	t0008	1357	5	0	2	3	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	t0009	1361	5	1	3	0	1	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	t0010	1358	5	1	4	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	t0011	1358	4	3	1	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	t0012	1358	3	3	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	t0013	1357	2	2	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	t0014	1358	2	2	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	t0015	1361	1	0	0	0	0	1	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	t0016	1357	1	1	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	t0017	1361	1	1	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	t0018	1361	1	1	0	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF135_chr19_58054282_58074755	0/0	t0019	1361	1	0	1	0	0	0	copy fasta	ZNF135	chr19	58054282	58074755
ZNF136_chr19_12158096_12194871	1/1	t0001	1979	169	9	43	72	11	32	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	t0002	1979	69	22	11	27	4	5	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	t0003	1979	53	26	5	17	1	4	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	t0004	1979	20	0	0	20	0	0	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	t0005	1979	15	15	0	0	0	0	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	t0006	1978	14	13	1	0	0	0	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	t0007	1984	11	3	0	6	0	2	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	t0008	1978	2	0	1	1	0	0	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	t0009	1979	2	0	0	2	0	0	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	t0010	1979	2	2	0	0	0	0	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	t0011	1979	1	0	0	0	0	1	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	t0012	1979	1	0	0	1	0	0	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	t0013	1979	1	0	0	1	0	0	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	t0014	1979	1	0	1	0	0	0	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	t0015	1979	1	1	0	0	0	0	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	t0016	1979	1	0	0	1	0	0	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	t0017	1978	1	0	0	1	0	0	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	t0018	1978	1	0	0	1	0	0	copy fasta	ZNF136	chr19	12158096	12194871
ZNF136_chr19_12158096_12194871	0/0	t0019	1979	1	1	0	0	0	0	copy fasta	ZNF136	chr19	12158096	12194871
ZNF138_chr7_64789428_64838680	0/0	t0001	1620	225	63	33	96	12	21	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/1	t0002	1620	84	2	22	40	5	14	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	t0003	1609	55	3	13	38	0	1	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	t0004	1620	31	6	5	20	0	0	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	t0005	1620	13	12	1	0	0	0	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	t0006	1620	4	4	0	0	0	0	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	t0007	1620	3	0	0	3	0	0	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	t0008	1620	2	0	0	0	0	2	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	t0009	1620	2	1	0	1	0	0	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	t0010	1620	1	0	1	0	0	0	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	t0011	1620	1	0	0	0	1	0	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	t0012	1620	1	1	0	0	0	0	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	t0013	1620	1	0	0	0	0	1	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	t0014	1620	1	0	0	1	0	0	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	t0015	1620	1	1	0	0	0	0	copy fasta	ZNF138	chr7	64789428	64838680
ZNF138_chr7_64789428_64838680	0/0	t0016	1620	1	0	1	0	0	0	copy fasta	ZNF138	chr7	64789428	64838680