JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF141_chr4_332814_389868	0/0	t0127	11178	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0128	11176	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0129	11177	1	0	0	0	0	1	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0130	11178	1	0	0	0	0	1	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0131	11168	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0132	11176	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0133	11177	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0134	11178	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0135	11178	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0136	11179	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0137	11179	1	0	0	0	1	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0138	11179	1	0	1	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0139	11180	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0140	11180	1	0	1	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0141	11178	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0142	11178	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0143	11179	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0144	11179	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0145	11179	1	0	1	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0146	11179	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0147	11179	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0148	11181	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0149	11179	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0150	11176	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0151	11178	1	0	0	1	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0152	11177	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0153	11177	1	0	1	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0154	11176	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0155	11178	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0156	11176	1	1	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	0/0	t0157	11180	1	0	0	0	0	1	copy fasta	ZNF141	chr4	332814	389868
ZNF141_chr4_332814_389868	1/0	t0158	11177	1	0	0	0	0	0	copy fasta	ZNF141	chr4	332814	389868
ZNF142_chr2_218628329_218664623	0/1	t0001	5627	122	4	33	66	5	13	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	1/0	t0002	5627	66	5	21	18	8	13	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0003	5627	52	12	1	35	0	4	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0004	5627	17	17	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0005	5627	13	13	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0006	5627	11	10	1	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0007	5627	11	11	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0008	5627	10	9	1	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0009	5627	4	4	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0010	5627	4	4	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0011	5627	2	2	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0012	5627	1	0	0	0	0	1	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0013	5627	1	0	0	0	0	1	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0014	5627	1	0	1	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0015	5627	1	0	0	0	1	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0016	5627	1	0	1	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0017	5627	1	1	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0018	5627	1	1	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623