JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF142_chr2_218628329_218664623	0/0	t0019	5627	1	1	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0020	5627	1	1	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0021	5627	1	0	0	1	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0022	5627	1	0	1	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0023	5627	1	0	0	1	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0024	5627	1	1	0	0	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF142_chr2_218628329_218664623	0/0	t0025	5627	1	0	0	1	0	0	copy fasta	ZNF142	chr2	218628329	218664623
ZNF143_chr11_9456012_9533524	1/1	t0001	984	318	70	65	130	12	39	copy fasta	ZNF143	chr11	9456012	9533524
ZNF143_chr11_9456012_9533524	0/0	t0002	984	7	4	3	0	0	0	copy fasta	ZNF143	chr11	9456012	9533524
ZNF143_chr11_9456012_9533524	0/0	t0003	984	5	2	0	0	0	3	copy fasta	ZNF143	chr11	9456012	9533524
ZNF143_chr11_9456012_9533524	0/0	t0004	984	2	2	0	0	0	0	copy fasta	ZNF143	chr11	9456012	9533524
ZNF146_chr19_36210106_36243768	1/0	t0001	2469	294	84	49	111	10	39	copy fasta	ZNF146	chr19	36210106	36243768
ZNF146_chr19_36210106_36243768	0/0	t0002	2469	58	1	14	36	4	3	copy fasta	ZNF146	chr19	36210106	36243768
ZNF146_chr19_36210106_36243768	0/0	t0003	2466	10	1	9	0	0	0	copy fasta	ZNF146	chr19	36210106	36243768
ZNF146_chr19_36210106_36243768	0/0	t0004	2469	7	0	0	7	0	0	copy fasta	ZNF146	chr19	36210106	36243768
ZNF146_chr19_36210106_36243768	0/0	t0005	2469	5	0	0	5	0	0	copy fasta	ZNF146	chr19	36210106	36243768
ZNF146_chr19_36210106_36243768	0/0	t0006	2469	3	3	0	0	0	0	copy fasta	ZNF146	chr19	36210106	36243768
ZNF146_chr19_36210106_36243768	0/0	t0007	2469	2	0	2	0	0	0	copy fasta	ZNF146	chr19	36210106	36243768
ZNF146_chr19_36210106_36243768	0/0	t0008	2469	2	0	0	2	0	0	copy fasta	ZNF146	chr19	36210106	36243768
ZNF146_chr19_36210106_36243768	0/0	t0009	2469	2	0	0	0	2	0	copy fasta	ZNF146	chr19	36210106	36243768
ZNF146_chr19_36210106_36243768	0/0	t0010	2469	1	0	1	0	0	0	copy fasta	ZNF146	chr19	36210106	36243768
ZNF146_chr19_36210106_36243768	0/0	t0011	2469	1	1	0	0	0	0	copy fasta	ZNF146	chr19	36210106	36243768
ZNF146_chr19_36210106_36243768	0/1	t0012	2469	1	0	0	0	0	0	copy fasta	ZNF146	chr19	36210106	36243768
ZNF146_chr19_36210106_36243768	0/0	t0013	2469	1	1	0	0	0	0	copy fasta	ZNF146	chr19	36210106	36243768
ZNF146_chr19_36210106_36243768	0/0	t0014	2469	1	1	0	0	0	0	copy fasta	ZNF146	chr19	36210106	36243768
ZNF146_chr19_36210106_36243768	0/0	t0015	2469	1	0	1	0	0	0	copy fasta	ZNF146	chr19	36210106	36243768
ZNF146_chr19_36210106_36243768	0/0	t0016	2469	1	0	0	1	0	0	copy fasta	ZNF146	chr19	36210106	36243768
ZNF148_chr3_125220669_125380325	0/1	t0001	7127	147	18	29	66	8	25	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	1/0	t0002	7130	100	11	13	59	6	10	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0003	7120	19	18	1	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0004	7126	9	8	1	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0005	7127	8	4	3	0	0	1	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0006	7130	3	1	2	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0007	7127	3	3	0	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0008	7130	2	2	0	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0009	7128	2	0	2	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0010	7127	2	0	0	2	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0011	7127	2	2	0	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0012	7127	2	2	0	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0013	7127	2	2	0	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0014	7127	2	0	0	0	0	2	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0015	7127	2	0	0	2	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0016	7130	1	1	0	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0017	7130	1	0	1	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0018	7129	1	1	0	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0019	7130	1	0	1	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0020	7121	1	1	0	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0021	7120	1	1	0	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0022	7127	1	1	0	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0023	7127	1	0	0	1	0	0	copy fasta	ZNF148	chr3	125220669	125380325