JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF148_chr3_125220669_125380325	0/0	t0024	7126	1	0	0	1	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0025	7127	1	0	1	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0026	7129	1	0	0	1	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0027	7128	1	0	0	1	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0028	7127	1	0	0	1	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0029	7127	1	1	0	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0030	7127	1	1	0	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0031	7127	1	0	1	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0032	7127	1	0	1	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0033	7127	1	0	0	1	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0034	7127	1	1	0	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0035	7127	1	1	0	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0036	7127	1	1	0	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0037	7127	1	1	0	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0038	7115	1	0	0	1	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0039	7127	1	1	0	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0040	7127	1	1	0	0	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0041	7127	1	0	0	1	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF148_chr3_125220669_125380325	0/0	t0042	7127	1	0	0	1	0	0	copy fasta	ZNF148	chr3	125220669	125380325
ZNF14_chr19_19705472_19738112	1/1	t0001	1035	204	55	38	89	5	15	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	t0002	1035	93	27	19	26	5	16	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	t0003	1035	81	1	13	53	4	10	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	t0004	1035	7	0	0	0	2	5	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	t0005	1035	6	6	0	0	0	0	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	t0006	1035	5	5	0	0	0	0	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	t0007	1035	1	0	0	1	0	0	copy fasta	ZNF14	chr19	19705472	19738112
ZNF14_chr19_19705472_19738112	0/0	t0008	1035	1	0	0	1	0	0	copy fasta	ZNF14	chr19	19705472	19738112
ZNF154_chr19_57691275_57714204	1/0	t0001	5594	100	0	25	54	3	17	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0002	5595	70	2	10	51	2	5	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0003	5594	49	4	8	25	4	8	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0004	5595	33	15	5	10	2	1	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0005	5595	31	0	6	25	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0006	5594	26	2	6	11	4	3	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0007	5594	13	13	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0008	5591	9	9	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0009	5593	8	0	0	8	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0010	5595	7	7	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0011	5596	7	0	0	7	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0012	5594	6	5	1	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0013	5594	5	5	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0014	5594	4	0	2	0	0	2	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0015	5593	3	0	0	3	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0016	5594	3	0	0	3	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0017	5594	3	3	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0018	5594	3	3	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0019	5589	3	3	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0020	5595	3	0	3	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0021	5594	2	0	2	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0022	5594	2	1	1	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0023	5594	2	2	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204