JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF154_chr19_57691275_57714204	0/0	t0024	5594	2	1	1	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0025	5594	2	2	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0026	5594	2	0	0	0	0	2	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0027	5594	2	0	0	1	0	1	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0028	5596	2	0	0	2	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0029	5594	2	2	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0030	5594	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0031	5594	1	1	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0032	5595	1	0	0	0	0	1	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0033	5593	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0034	5594	1	0	0	0	0	1	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0035	5594	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0036	5594	1	0	1	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0037	5594	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0038	5594	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0039	5594	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0040	5594	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0041	5594	1	1	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0042	5594	1	0	0	0	1	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0043	5594	1	1	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0044	5594	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0045	5594	1	0	1	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0046	5594	1	1	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0047	5594	1	1	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0048	5594	1	0	1	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0049	5594	1	0	0	0	0	1	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0050	5594	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0051	5594	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0052	5594	1	0	1	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0053	5594	1	0	1	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0054	5594	1	0	1	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0055	5594	1	0	0	0	1	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/1	t0056	5594	1	0	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0057	5594	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0058	5594	1	0	0	0	0	1	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0059	5588	1	1	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0060	5595	1	0	1	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0061	5595	1	0	0	0	0	1	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0062	5595	1	0	0	0	1	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0063	5595	1	1	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0064	5595	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0065	5595	1	1	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0066	5595	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0067	5595	1	0	1	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0068	5589	1	1	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0069	5596	1	0	0	1	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0070	5591	1	1	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF154_chr19_57691275_57714204	0/0	t0071	5592	1	1	0	0	0	0	copy fasta	ZNF154	chr19	57691275	57714204
ZNF155_chr19_43979188_44003326	0/1	t0001	996	165	24	24	81	9	26	copy fasta	ZNF155	chr19	43979188	44003326
ZNF155_chr19_43979188_44003326	0/0	t0002	996	120	7	19	82	3	9	copy fasta	ZNF155	chr19	43979188	44003326