JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C1orf50_chr1_42762249_42784491	0/0	t0023	4160	4	1	1	0	0	2	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0024	4171	3	3	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0025	4168	3	0	1	0	0	2	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0026	4150	3	3	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0027	4162	3	0	1	2	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0028	4163	3	0	1	2	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0029	4164	3	1	2	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0030	4184	3	0	0	1	0	2	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0031	4173	2	1	1	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0032	4164	2	0	1	0	0	1	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0033	4165	2	1	1	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0034	4158	2	2	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0035	4159	2	0	2	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0036	4160	2	0	1	0	1	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0037	4159	2	0	0	2	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0038	4160	2	0	0	2	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0039	4159	2	2	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0040	4161	2	1	1	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0041	4162	2	1	1	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0042	4158	2	0	0	2	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0043	4161	2	0	2	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0044	4161	2	0	0	0	0	2	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0045	4182	2	0	1	0	0	1	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0046	4186	2	0	0	0	0	2	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0047	4162	1	1	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0048	4162	1	1	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0049	4163	1	0	1	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0050	4176	1	1	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0051	4163	1	0	1	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0052	4163	1	0	0	0	0	1	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0053	4164	1	0	0	0	0	1	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0054	4164	1	1	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0055	4164	1	0	1	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0056	4169	1	0	1	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0057	4170	1	0	0	0	0	1	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0058	4172	1	0	0	0	0	1	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0059	4185	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0060	4155	1	1	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0061	4161	1	1	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0062	4159	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0063	4158	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0064	4157	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0065	4158	1	1	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0066	4157	1	1	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0067	4159	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0068	4161	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0069	4152	1	1	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0070	4161	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0071	4158	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0072	4159	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491