JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF175_chr19_51566283_51597510	0/0	t0006	4427	13	0	0	13	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0007	4417	11	10	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0008	4417	10	0	0	10	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0009	4405	8	0	0	8	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0010	4405	8	1	0	7	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0011	4417	8	1	2	0	1	4	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0012	4417	7	7	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0013	4421	7	0	0	7	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0014	4405	6	0	6	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0015	4405	5	0	2	3	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0016	4421	5	5	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0017	4428	5	0	0	5	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0018	4427	5	0	3	2	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0019	4418	4	0	1	0	0	3	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0020	4427	4	0	1	1	1	1	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0021	4417	4	0	4	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0022	4423	4	4	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0023	4405	4	0	0	0	0	4	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0024	4427	4	0	0	3	0	1	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0025	4421	4	4	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0026	4417	3	3	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0027	4417	3	3	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0028	4421	3	3	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0029	4417	3	0	3	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0030	4417	3	0	1	0	2	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0031	4427	2	0	0	2	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0032	4421	2	0	0	2	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0033	4421	2	0	2	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0034	4418	2	0	0	0	2	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0035	4417	2	1	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0036	4417	2	0	0	0	0	2	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0037	4405	2	0	0	2	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0038	4427	2	0	2	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0039	4421	2	2	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0040	4420	2	2	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0041	4417	2	0	2	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0042	4417	2	0	2	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0043	4417	2	0	2	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0044	4405	1	0	0	0	0	1	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0045	4427	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0046	4417	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0047	4427	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0048	4417	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0049	4417	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0050	4423	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0051	4423	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0052	4417	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0053	4405	1	0	0	0	1	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0054	4405	1	0	0	0	1	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0055	4405	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510