JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF175_chr19_51566283_51597510	0/0	t0056	4405	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0057	4405	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0058	4405	1	0	0	0	0	1	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0059	4405	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0060	4405	1	0	0	0	0	1	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0061	4405	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0062	4406	1	0	0	0	0	1	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0063	4405	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0064	4427	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0065	4427	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0066	4427	1	0	0	0	0	1	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0067	4427	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0068	4428	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0069	4427	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0070	4427	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0071	4427	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0072	4421	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0073	4421	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0074	4421	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0075	4421	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0076	4421	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0077	4417	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	1/0	t0078	4417	1	0	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0079	4405	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0080	4428	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0081	4417	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0082	4417	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0083	4417	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0084	4417	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0085	4417	1	0	0	0	1	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0086	4417	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0087	4421	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0088	4421	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0089	4423	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0090	4417	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0091	4417	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0092	4417	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0093	4417	1	0	0	0	0	1	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0094	4417	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0095	4417	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0096	4417	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0097	4417	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0098	4405	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0099	4405	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0100	4405	1	0	0	0	1	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0101	4405	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0102	4405	1	0	0	0	0	1	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0103	4405	1	0	0	0	0	1	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0104	4405	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/1	t0105	4405	1	0	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510