JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF175_chr19_51566283_51597510	0/0	t0106	4405	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0107	4405	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0108	4418	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0109	4427	1	0	0	0	0	1	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0110	4427	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0111	4427	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0112	4427	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0113	4421	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0114	4421	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0115	4421	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0116	4420	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0117	4427	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0118	4427	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0119	4421	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0120	4421	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0121	4421	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0122	4421	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0123	4421	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0124	4421	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0125	4421	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0126	4427	1	0	0	0	0	1	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0127	4421	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0128	4417	1	0	0	0	0	1	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0129	4417	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0130	4417	1	1	0	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0131	4417	1	0	0	0	0	1	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0132	4417	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0133	4418	1	0	0	0	0	1	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0134	4417	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0135	4417	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0136	4427	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0137	4427	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0138	4421	1	0	0	0	0	1	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0139	4422	1	0	0	1	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0140	4417	1	0	0	0	0	1	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0141	4417	1	0	0	0	0	1	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0142	4417	1	0	0	0	0	1	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0143	4417	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0144	4417	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0145	4417	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0146	4417	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF175_chr19_51566283_51597510	0/0	t0147	4417	1	0	1	0	0	0	copy fasta	ZNF175	chr19	51566283	51597510
ZNF177_chr19_9358013_9387617	0/1	t0001	1161	204	54	35	84	7	23	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	1/0	t0002	1161	165	25	23	97	6	13	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	t0003	1157	12	0	9	0	2	1	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	t0004	1161	6	6	0	0	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	t0005	1161	6	0	6	0	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	t0006	1161	4	3	1	0	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	t0007	1161	3	2	0	0	0	1	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	t0008	1161	2	2	0	0	0	0	copy fasta	ZNF177	chr19	9358013	9387617