JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF177_chr19_9358013_9387617	0/0	t0009	1161	2	2	0	0	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	t0010	1161	2	0	0	2	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	t0011	1161	2	0	2	0	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	t0012	1161	2	2	0	0	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	t0013	1236	1	0	0	0	1	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	t0014	1161	1	1	0	0	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	t0015	1161	1	0	0	1	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF177_chr19_9358013_9387617	0/0	t0016	1161	1	1	0	0	0	0	copy fasta	ZNF177	chr19	9358013	9387617
ZNF17_chr19_57406161_57426934	0/0	t0001	720	296	66	65	123	11	31	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	1/1	t0002	720	50	0	5	38	2	3	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	t0003	720	29	6	4	11	1	7	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	t0004	720	11	11	0	0	0	0	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	t0005	720	7	7	0	0	0	0	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	t0006	720	7	0	0	7	0	0	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	t0007	720	2	2	0	0	0	0	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	t0008	720	1	0	0	1	0	0	copy fasta	ZNF17	chr19	57406161	57426934
ZNF17_chr19_57406161_57426934	0/0	t0009	720	1	0	0	0	0	1	copy fasta	ZNF17	chr19	57406161	57426934
ZNF180_chr19_44469443_44505522	0/1	t0001	2251	221	13	44	120	9	34	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0002	2251	64	0	4	57	1	2	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	1/0	t0003	2251	48	20	15	0	6	6	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0004	2251	37	16	3	17	1	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0005	2251	12	12	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0006	2250	6	5	1	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0007	2251	5	0	0	5	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0008	2251	4	4	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0009	2251	4	4	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0010	2251	3	3	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0011	2251	3	3	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0012	8318	2	2	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0013	2251	2	2	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0014	2251	2	0	0	2	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0015	2250	1	1	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0016	2251	1	0	0	0	1	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0017	2251	1	0	0	1	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0018	2251	1	0	0	0	0	1	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0019	2251	1	0	0	1	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0020	2251	1	1	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0021	2251	1	0	0	1	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0022	2251	1	1	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0023	2251	1	1	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0024	2251	1	0	0	0	0	1	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0025	8317	1	0	1	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0026	8317	1	1	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0027	8318	1	1	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0028	2251	1	1	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF180_chr19_44469443_44505522	0/0	t0029	2251	1	1	0	0	0	0	copy fasta	ZNF180	chr19	44469443	44505522
ZNF181_chr19_34729243_34750378	0/1	t0001	4077	116	8	17	70	6	14	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0002	4077	102	40	22	25	5	10	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	1/0	t0003	4077	68	0	16	50	1	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0004	4077	61	0	11	42	1	7	copy fasta	ZNF181	chr19	34729243	34750378