JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF181_chr19_34729243_34750378	0/0	t0005	4077	18	9	3	0	4	2	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0006	4077	15	2	0	10	0	3	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0007	4077	12	12	0	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0008	4077	10	2	1	5	0	2	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0009	4077	5	0	0	5	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0010	4072	4	0	0	4	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0011	4077	3	0	0	3	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0012	4077	3	3	0	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0013	4074	3	3	0	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0014	4077	2	1	1	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0015	4077	2	2	0	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0016	4077	2	2	0	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0017	4077	2	2	0	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0018	4077	2	0	2	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0019	4077	2	2	0	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0020	4077	1	0	0	0	1	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0021	4077	1	0	1	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0022	4077	1	0	0	1	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0023	4077	1	0	0	1	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0024	4077	1	0	0	0	0	1	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0025	4077	1	0	0	1	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0026	4077	1	0	0	1	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0027	4077	1	0	0	1	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0028	4077	1	1	0	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0029	4077	1	0	1	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0030	4077	1	0	1	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0031	4077	1	0	0	0	0	1	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0032	4077	1	0	1	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0033	4077	1	0	1	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0034	4077	1	0	0	1	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF181_chr19_34729243_34750378	0/0	t0035	4077	1	1	0	0	0	0	copy fasta	ZNF181	chr19	34729243	34750378
ZNF182_chrX_47969851_48008989	0/1	t0001	1640	202	38	31	98	5	29	copy fasta	ZNF182	chrX	47969851	48008989
ZNF182_chrX_47969851_48008989	0/0	t0002	1641	20	16	4	0	0	0	copy fasta	ZNF182	chrX	47969851	48008989
ZNF182_chrX_47969851_48008989	0/0	t0003	1639	14	9	0	5	0	0	copy fasta	ZNF182	chrX	47969851	48008989
ZNF182_chrX_47969851_48008989	0/0	t0004	1641	8	5	1	1	0	1	copy fasta	ZNF182	chrX	47969851	48008989
ZNF182_chrX_47969851_48008989	1/0	t0005	1637	7	0	4	0	1	1	copy fasta	ZNF182	chrX	47969851	48008989
ZNF182_chrX_47969851_48008989	0/0	t0006	1639	6	0	4	0	1	1	copy fasta	ZNF182	chrX	47969851	48008989
ZNF182_chrX_47969851_48008989	0/0	t0007	1640	4	4	0	0	0	0	copy fasta	ZNF182	chrX	47969851	48008989
ZNF182_chrX_47969851_48008989	0/0	t0008	1640	2	0	0	2	0	0	copy fasta	ZNF182	chrX	47969851	48008989
ZNF182_chrX_47969851_48008989	0/0	t0009	1640	1	1	0	0	0	0	copy fasta	ZNF182	chrX	47969851	48008989
ZNF182_chrX_47969851_48008989	0/0	t0010	1640	1	1	0	0	0	0	copy fasta	ZNF182	chrX	47969851	48008989
ZNF182_chrX_47969851_48008989	0/0	t0011	1641	1	0	0	1	0	0	copy fasta	ZNF182	chrX	47969851	48008989
ZNF182_chrX_47969851_48008989	0/0	t0012	1640	1	0	1	0	0	0	copy fasta	ZNF182	chrX	47969851	48008989
ZNF182_chrX_47969851_48008989	0/0	t0013	1641	1	1	0	0	0	0	copy fasta	ZNF182	chrX	47969851	48008989
ZNF182_chrX_47969851_48008989	0/0	t0014	1636	1	0	1	0	0	0	copy fasta	ZNF182	chrX	47969851	48008989
ZNF182_chrX_47969851_48008989	0/0	t0015	1640	1	1	0	0	0	0	copy fasta	ZNF182	chrX	47969851	48008989
ZNF184_chr6_27445747_27478105	0/1	t0001	1073	204	43	30	96	5	29	copy fasta	ZNF184	chr6	27445747	27478105
ZNF184_chr6_27445747_27478105	1/0	t0002	1073	163	40	32	76	4	10	copy fasta	ZNF184	chr6	27445747	27478105
ZNF184_chr6_27445747_27478105	0/0	t0003	1073	17	7	9	0	1	0	copy fasta	ZNF184	chr6	27445747	27478105
ZNF184_chr6_27445747_27478105	0/0	t0004	1073	3	1	2	0	0	0	copy fasta	ZNF184	chr6	27445747	27478105