JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF184_chr6_27445747_27478105	0/0	t0005	1073	1	0	0	0	0	1	copy fasta	ZNF184	chr6	27445747	27478105
ZNF184_chr6_27445747_27478105	0/0	t0006	1073	1	0	0	1	0	0	copy fasta	ZNF184	chr6	27445747	27478105
ZNF184_chr6_27445747_27478105	0/0	t0007	1073	1	0	0	1	0	0	copy fasta	ZNF184	chr6	27445747	27478105
ZNF184_chr6_27445747_27478105	0/0	t0008	1073	1	0	0	1	0	0	copy fasta	ZNF184	chr6	27445747	27478105
ZNF184_chr6_27445747_27478105	0/0	t0009	1073	1	0	0	1	0	0	copy fasta	ZNF184	chr6	27445747	27478105
ZNF184_chr6_27445747_27478105	0/0	t0010	1073	1	1	0	0	0	0	copy fasta	ZNF184	chr6	27445747	27478105
ZNF184_chr6_27445747_27478105	0/0	t0011	1073	1	0	1	0	0	0	copy fasta	ZNF184	chr6	27445747	27478105
ZNF185_chrX_152893067_152978474	0/1	t0001	2433	98	3	21	55	6	12	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0002	2433	45	0	16	22	1	6	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	1/0	t0003	2419	18	8	0	7	0	2	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0004	2419	16	7	1	2	0	6	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0005	2433	7	4	0	3	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0006	2419	7	7	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0007	2433	6	0	4	0	0	2	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0008	2419	5	5	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0009	2419	5	0	0	4	0	1	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0010	2419	5	4	1	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0011	2419	4	0	0	4	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0012	2433	3	3	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0013	2432	2	2	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0014	2433	2	2	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0015	2433	2	2	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0016	2433	2	2	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0017	2433	2	2	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0018	2419	2	2	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0019	2454	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0020	2454	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0021	2447	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0022	2440	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0023	2440	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0024	2432	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0025	2433	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0026	2433	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0027	2434	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0028	2433	1	0	0	1	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0029	2433	1	0	0	0	0	1	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0030	2434	1	0	0	1	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0031	2433	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0032	2433	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0033	2433	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0034	2432	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0035	2433	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0036	2419	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0037	2419	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0038	2419	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0039	2419	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0040	2419	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0041	2418	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0042	2418	1	0	1	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0043	2419	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474