JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF185_chrX_152893067_152978474	0/0	t0044	2420	1	0	1	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0045	2419	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0046	2419	1	1	0	0	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF185_chrX_152893067_152978474	0/0	t0047	2432	1	0	0	1	0	0	copy fasta	ZNF185	chrX	152893067	152978474
ZNF189_chr9_101393851_101415654	0/0	t0001	1312	204	42	37	91	6	28	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/1	t0002	1312	152	27	23	85	5	11	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	1/0	t0003	1312	38	0	8	26	3	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	t0004	1312	17	15	2	0	0	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	t0005	1312	11	0	4	0	1	6	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	t0006	1312	9	0	3	5	0	1	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	t0007	1312	5	5	0	0	0	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	t0008	1312	3	3	0	0	0	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	t0009	1312	2	0	1	0	1	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	t0010	1312	1	1	0	0	0	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	t0011	1312	1	1	0	0	0	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	t0012	1312	1	0	0	1	0	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	t0013	1312	1	0	0	1	0	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	t0014	1312	1	0	0	1	0	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	t0015	1312	1	0	0	1	0	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF189_chr9_101393851_101415654	0/0	t0016	1312	1	0	0	1	0	0	copy fasta	ZNF189	chr9	101393851	101415654
ZNF18_chr17_11972439_12002475	1/1	t0001	646	383	90	68	173	14	36	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	t0002	645	6	6	0	0	0	0	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	t0003	646	2	0	0	0	0	2	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	t0004	646	1	0	0	1	0	0	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	t0005	646	1	0	0	1	0	0	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	t0006	646	1	0	0	0	0	1	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	t0007	646	1	0	0	0	0	1	copy fasta	ZNF18	chr17	11972439	12002475
ZNF18_chr17_11972439_12002475	0/0	t0008	646	1	0	0	1	0	0	copy fasta	ZNF18	chr17	11972439	12002475
ZNF195_chr11_3352927_3384146	0/1	t0001	1349	187	35	46	79	6	20	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	t0002	1349	106	10	7	72	0	17	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	1/0	t0003	1298	19	6	7	2	2	1	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	t0004	1349	13	13	0	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	t0005	1349	9	9	0	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	t0006	1345	7	7	0	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	t0007	1349	5	5	0	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	t0008	1349	3	0	0	3	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	t0009	1349	2	0	0	2	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	t0010	1349	2	2	0	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	t0011	1298	2	2	0	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	t0012	1349	1	0	1	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	t0013	1349	1	1	0	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	t0014	1349	1	0	1	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	t0015	1349	1	1	0	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	t0016	1349	1	0	0	1	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	t0017	1349	1	0	0	1	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	t0018	1349	1	0	1	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	t0019	1349	1	1	0	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	t0020	1349	1	0	1	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	t0021	1298	1	1	0	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146
ZNF195_chr11_3352927_3384146	0/0	t0022	1349	1	1	0	0	0	0	copy fasta	ZNF195	chr11	3352927	3384146