JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF197_chr3_44620036_44653471	0/1	t0001	4441	141	20	33	59	7	21	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	1/0	t0002	4441	38	9	7	16	1	4	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0003	4442	32	14	6	7	3	2	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0004	4441	30	12	11	0	3	4	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0005	4433	12	9	3	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0006	4441	11	10	0	0	1	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0007	4440	6	0	0	6	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0008	4435	5	5	0	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0009	4442	5	0	4	0	1	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0010	4441	3	0	1	0	0	2	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0011	4441	3	0	0	2	0	1	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0012	4441	2	2	0	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0013	4442	2	2	0	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0014	4441	2	2	0	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0015	4442	2	2	0	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0016	4435	1	1	0	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0017	4441	1	1	0	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0018	4434	1	1	0	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0019	4441	1	1	0	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0020	4441	1	0	1	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0021	4441	1	1	0	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0022	4442	1	1	0	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0023	4441	1	0	0	0	0	1	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0024	4441	1	0	0	1	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0025	4441	1	0	0	1	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0026	4441	1	0	0	1	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0027	4441	1	0	0	0	0	1	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0028	4441	1	1	0	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0029	4441	1	0	0	1	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0030	4442	1	1	0	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0031	4441	1	0	0	1	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0032	4441	1	0	0	1	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF197_chr3_44620036_44653471	0/0	t0033	4441	1	1	0	0	0	0	copy fasta	ZNF197	chr3	44620036	44653471
ZNF19_chr16_71468583_71494324	1/0	t0001	1830	221	40	45	113	7	15	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	t0002	1830	91	11	8	55	2	15	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	t0003	1830	25	1	6	10	2	6	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	t0004	1830	20	7	10	2	1	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/1	t0005	1830	13	7	2	0	1	2	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	t0006	1830	10	10	0	0	0	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	t0007	1830	7	1	0	6	0	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	t0008	1830	4	3	0	0	1	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	t0009	1830	3	3	0	0	0	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	t0010	1830	3	3	0	0	0	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	t0011	1830	2	2	0	0	0	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	t0012	1830	1	0	1	0	0	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	t0013	1830	1	1	0	0	0	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	t0014	1830	1	1	0	0	0	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	t0015	1830	1	1	0	0	0	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	t0016	1830	1	1	0	0	0	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF19_chr16_71468583_71494324	0/0	t0017	1830	1	1	0	0	0	0	copy fasta	ZNF19	chr16	71468583	71494324