JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF19_chr16_71468583_71494324	0/0	t0018	1830	1	1	0	0	0	0	copy fasta	ZNF19	chr16	71468583	71494324
ZNF200_chr16_3217325_3240158	0/0	t0001	1821	199	38	39	90	6	26	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	1/1	t0002	1821	141	40	21	65	6	7	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0003	1821	8	0	2	6	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0004	1821	4	0	1	0	0	3	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0005	1821	4	0	3	0	1	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0006	1821	3	3	0	0	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0007	1821	3	0	0	3	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0008	1824	3	3	0	0	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0009	1821	3	3	0	0	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0010	1821	2	2	0	0	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0011	1821	2	0	0	0	0	2	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0012	1824	2	1	1	0	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0013	1821	2	2	0	0	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0014	1834	1	0	0	1	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0015	1821	1	0	0	1	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0016	1821	1	0	1	0	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0017	1821	1	1	0	0	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0018	1821	1	1	0	0	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0019	1821	1	0	0	0	1	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0020	1821	1	0	0	1	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0021	1821	1	0	1	0	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0022	1821	1	1	0	0	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0023	1821	1	0	0	1	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0024	1821	1	0	0	1	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0025	1821	1	0	0	1	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0026	1821	1	0	1	0	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF200_chr16_3217325_3240158	0/0	t0027	1821	1	1	0	0	0	0	copy fasta	ZNF200	chr16	3217325	3240158
ZNF202_chr11_123718914_123746660	1/0	t0001	2489	235	26	42	133	6	27	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/1	t0002	2489	101	29	21	29	7	14	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0003	2489	19	2	1	16	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0004	2489	18	4	2	11	0	1	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0005	2489	8	0	8	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0006	2489	4	4	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0007	2489	3	1	0	1	1	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0008	2489	3	0	0	2	0	1	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0009	2489	2	0	2	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0010	2489	2	0	0	2	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0011	2489	2	2	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0012	2489	2	2	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0013	2489	2	2	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0014	2489	2	2	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0015	2489	2	2	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0016	2489	1	0	0	1	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0017	2489	1	0	0	1	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0018	2489	1	0	0	1	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0019	2489	1	1	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0020	2489	1	0	0	1	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0021	2489	1	1	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0022	2489	1	1	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660