JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF202_chr11_123718914_123746660	0/0	t0023	2489	1	1	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0024	2489	1	0	0	1	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0025	2489	1	1	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0026	2489	1	1	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0027	2489	1	1	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0028	2489	1	1	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0029	2489	1	0	0	1	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0030	2489	1	0	0	1	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0031	2489	1	0	1	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0032	2489	1	0	0	1	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0033	2489	1	1	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0034	2489	1	0	0	0	0	1	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0035	2489	1	0	0	1	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0036	2489	1	0	1	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0037	2489	1	0	0	1	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF202_chr11_123718914_123746660	0/0	t0038	2489	1	1	0	0	0	0	copy fasta	ZNF202	chr11	123718914	123746660
ZNF205_chr16_3107586_3125517	1/1	t0001	304	412	93	74	193	12	38	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	t0002	304	2	0	0	0	0	2	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	t0003	304	2	2	0	0	0	0	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	t0004	304	1	1	0	0	0	0	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	t0005	304	1	1	0	0	0	0	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	t0006	304	1	0	0	1	0	0	copy fasta	ZNF205	chr16	3107586	3125517
ZNF205_chr16_3107586_3125517	0/0	t0007	304	1	1	0	0	0	0	copy fasta	ZNF205	chr16	3107586	3125517
ZNF207_chr17_32345157_32386885	1/0	t0001	12256	76	10	16	31	0	18	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0002	12257	32	9	14	0	3	6	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0003	12225	16	1	1	12	0	2	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0004	12253	12	0	0	11	0	1	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0005	12225	11	9	1	0	1	0	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0006	12258	10	2	6	0	0	2	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0007	12224	10	8	2	0	0	0	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0008	12257	8	2	1	3	0	2	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0009	12264	6	4	2	0	0	0	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0010	12256	6	6	0	0	0	0	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0011	12225	6	1	2	0	2	1	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0012	12256	5	5	0	0	0	0	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0013	12255	4	0	2	2	0	0	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0014	12257	4	4	0	0	0	0	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0015	12226	4	0	0	2	2	0	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0016	12255	3	0	3	0	0	0	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0017	12257	3	0	2	0	0	1	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0018	12256	3	3	0	0	0	0	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0019	12256	3	3	0	0	0	0	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0020	12254	3	0	0	2	0	1	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0021	12257	2	0	1	0	0	1	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0022	12256	2	2	0	0	0	0	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0023	12253	2	0	0	0	0	2	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0024	12253	2	0	2	0	0	0	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0025	12259	2	0	1	0	0	1	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0026	12253	2	0	0	2	0	0	copy fasta	ZNF207	chr17	32345157	32386885
ZNF207_chr17_32345157_32386885	0/0	t0027	12254	2	0	0	1	0	1	copy fasta	ZNF207	chr17	32345157	32386885