JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C1orf50_chr1_42762249_42784491	0/0	t0073	4162	1	1	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0074	4161	1	1	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0075	4159	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0076	4160	1	0	0	0	0	1	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0077	4162	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0078	4162	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0079	4161	1	0	1	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/1	t0080	4162	1	0	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0081	4162	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0082	4163	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0083	4161	1	1	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0084	4161	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0085	4162	1	0	0	0	0	1	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0086	4163	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0087	4162	1	0	0	0	0	1	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0088	4165	1	0	1	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0089	4162	1	0	0	0	0	1	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0090	4162	1	0	0	0	0	1	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0091	4161	1	0	1	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0092	4164	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0093	4162	1	0	1	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0094	4167	1	1	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0095	4161	1	1	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0096	4162	1	1	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0097	4162	1	1	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0098	4168	1	1	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0099	4169	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0100	4173	1	0	0	0	0	1	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0101	4173	1	0	0	0	0	1	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0102	4181	1	1	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0103	4180	1	0	0	0	0	1	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0104	4184	1	1	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0105	4180	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0106	4185	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0107	4187	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0108	4195	1	1	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0109	4194	1	0	0	0	0	1	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0110	4171	1	1	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	t0111	4162	1	0	0	0	1	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf52_chr1_85244953_85264662	0/0	t0001	2706	118	18	39	40	8	13	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	1/0	t0002	2706	114	19	29	60	0	5	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/1	t0003	2706	82	3	8	62	3	5	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0004	2706	49	2	3	37	1	6	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0005	2706	22	21	1	0	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0006	2706	9	9	0	0	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0007	2706	9	9	0	0	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0008	2706	4	0	0	4	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0009	2706	3	3	0	0	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0010	2704	3	0	0	0	1	2	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0011	2706	2	0	0	0	0	2	copy fasta	C1orf52	chr1	85244953	85264662