JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF208_chr19_21961095_22015943	1/0	t0001	5246	104	20	13	49	2	19	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/1	t0002	5244	103	5	22	63	9	3	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0003	5245	59	6	11	35	1	6	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0004	5246	30	1	6	17	0	6	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0005	5246	14	9	3	0	2	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0006	5246	8	8	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0007	5246	6	0	0	5	0	1	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0008	5245	5	5	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0009	5246	5	5	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0010	5245	4	4	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0011	5246	3	3	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0012	5246	3	1	2	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0013	5244	3	2	0	0	1	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0014	5246	3	0	0	3	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0015	5244	2	0	0	0	2	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0016	5244	2	0	0	2	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0017	5244	2	0	1	0	1	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0018	5247	2	2	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0019	5246	2	0	0	2	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0020	5246	2	2	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0021	5244	2	1	1	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0022	5245	2	2	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0023	5246	2	2	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0024	5246	2	2	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0025	5245	2	2	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0026	5245	2	2	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0027	5244	1	0	0	0	0	1	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0028	5246	1	0	0	1	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0029	5244	1	0	0	1	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0030	5244	1	0	0	1	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0031	5244	1	0	1	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0032	5244	1	0	0	1	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0033	5247	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0034	5245	1	0	0	0	0	1	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0035	5246	1	0	0	0	0	1	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0036	5246	1	0	0	1	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0037	5246	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0038	5246	1	0	1	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0039	5246	1	0	0	1	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0040	5246	1	0	0	1	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0041	5246	1	0	0	0	0	1	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0042	5246	1	0	0	1	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0043	5246	1	0	0	0	0	1	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0044	5246	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0045	5244	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0046	5244	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0047	5247	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0048	5245	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0049	5246	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943
ZNF208_chr19_21961095_22015943	0/0	t0050	5246	1	1	0	0	0	0	copy fasta	ZNF208	chr19	21961095	22015943