JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF212_chr7_149234651_149260606	0/0	t0012	1333	2	1	0	1	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0013	1324	2	2	0	0	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0014	1324	2	2	0	0	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0015	1324	2	0	2	0	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0016	1342	1	0	0	1	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0017	1339	1	0	0	1	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0018	1335	1	0	1	0	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0019	1329	1	0	0	0	0	1	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0020	1327	1	0	0	0	0	1	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0021	1323	1	1	0	0	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0022	1324	1	1	0	0	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0023	1324	1	1	0	0	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0024	1324	1	1	0	0	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0025	1324	1	1	0	0	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	1/0	t0026	1320	1	0	0	0	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0027	1321	1	0	1	0	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF212_chr7_149234651_149260606	0/0	t0028	1329	1	0	0	1	0	0	copy fasta	ZNF212	chr7	149234651	149260606
ZNF213_chr16_3130029_3147804	1/0	t0001	1932	163	28	23	93	7	11	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0002	1932	102	20	16	54	1	11	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0003	2048	34	2	11	19	0	2	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/1	t0004	2060	24	0	5	6	2	10	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0005	2060	9	0	7	0	2	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0006	1932	8	0	4	4	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0007	2054	7	7	0	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0008	1969	7	7	0	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0009	1969	6	6	0	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0010	1920	5	4	1	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0011	1932	5	0	2	1	0	2	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0012	1993	5	5	0	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0013	2048	4	0	0	4	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0014	1932	4	4	0	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0015	2054	4	0	0	1	0	3	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0016	1938	4	0	4	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0017	2054	3	0	1	1	1	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0018	1932	3	0	2	1	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0019	1981	3	3	0	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0020	1932	2	0	0	2	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0021	2048	2	0	0	2	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0022	2032	2	2	0	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0023	1932	2	0	0	2	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0024	1932	2	0	0	2	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0025	2060	2	2	0	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0026	1944	2	2	0	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0027	2048	1	1	0	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0028	2048	1	0	0	1	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0029	2048	1	0	0	1	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0030	1920	1	0	0	0	0	1	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0031	2054	1	1	0	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0032	1932	1	0	0	1	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0033	1932	1	0	0	1	0	0	copy fasta	ZNF213	chr16	3130029	3147804