JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF213_chr16_3130029_3147804	0/0	t0034	1932	1	0	0	1	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0035	1932	1	0	0	0	1	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0036	1932	1	0	1	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0037	1932	1	0	0	1	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0038	2054	1	0	0	0	0	1	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0039	1926	1	1	0	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0040	2060	1	0	1	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0041	2060	1	0	0	0	0	1	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0042	1938	1	1	0	0	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0043	1944	1	0	0	1	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF213_chr16_3130029_3147804	0/0	t0044	2072	1	0	0	1	0	0	copy fasta	ZNF213	chr16	3130029	3147804
ZNF214_chr11_6992085_7025346	0/1	t0001	3073	163	35	29	72	8	18	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0002	3078	64	7	10	37	2	8	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0003	3073	44	0	3	32	2	7	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0004	3077	20	5	8	0	4	3	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0005	3072	18	14	2	0	0	2	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0006	3078	10	5	0	5	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0007	3074	9	9	0	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	1/0	t0008	3072	7	4	2	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0009	3079	6	0	0	6	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0010	3075	4	4	0	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0011	3078	4	2	2	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0012	3076	3	0	0	3	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0013	3078	1	0	1	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0014	3073	1	1	0	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0015	3073	1	1	0	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0016	3074	1	1	0	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0017	3072	1	1	0	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0018	3072	1	1	0	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0019	3072	1	0	0	0	0	1	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0020	3072	1	0	0	0	0	1	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0021	3073	1	0	0	1	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0022	3073	1	1	0	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0023	3073	1	0	1	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0024	3073	1	1	0	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0025	3077	1	0	1	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF214_chr11_6992085_7025346	0/0	t0026	3077	1	0	1	0	0	0	copy fasta	ZNF214	chr11	6992085	7025346
ZNF215_chr11_6921426_6963047	0/0	t0001	2102	127	12	11	90	4	10	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0002	2102	114	16	17	57	4	20	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0003	2102	38	2	0	35	0	1	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0004	2102	24	1	9	6	1	7	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/1	t0005	2102	22	11	5	0	3	2	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0006	2102	17	1	0	15	0	1	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	1/0	t0007	2102	13	3	1	8	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0008	2096	13	13	0	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0009	2102	10	2	1	5	1	1	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0010	2102	9	9	0	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0011	2102	8	0	8	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0012	2102	6	1	0	5	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0013	2102	5	0	4	0	0	1	copy fasta	ZNF215	chr11	6921426	6963047