JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF215_chr11_6921426_6963047	0/0	t0014	2102	5	0	4	0	0	1	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0015	2102	5	4	1	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0016	2102	4	3	1	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0017	2096	4	4	0	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0018	2102	3	1	1	0	1	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0019	2102	3	0	0	3	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0020	2102	3	0	1	0	2	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0021	2102	2	0	1	0	0	1	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0022	2102	2	1	1	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0023	2102	2	2	0	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0024	2096	2	2	0	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0025	2102	2	0	0	2	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0026	2102	2	2	0	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0027	2102	1	0	1	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0028	2102	1	0	1	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0029	2102	1	0	1	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0030	2102	1	1	0	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0031	2102	1	0	0	1	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0032	2102	1	0	0	0	0	1	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0033	2096	1	1	0	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0034	2102	1	1	0	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0035	2102	1	0	1	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0036	2102	1	1	0	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0037	2102	1	1	0	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0038	2102	1	0	1	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0039	2102	1	1	0	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0040	2102	1	0	1	0	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF215_chr11_6921426_6963047	0/0	t0041	2102	1	0	0	1	0	0	copy fasta	ZNF215	chr11	6921426	6963047
ZNF217_chr20_53562071_53598839	0/1	t0001	2644	188	40	38	79	2	28	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0002	2644	94	11	11	59	2	11	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0003	2644	55	9	6	31	2	7	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	1/0	t0004	2644	12	0	3	0	7	1	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0005	2644	10	1	6	0	2	1	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0006	2643	9	7	2	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0007	2643	5	4	0	0	0	1	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0008	2644	5	5	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0009	2643	4	3	1	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0010	2644	3	1	0	2	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0011	2643	3	3	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0012	2644	2	0	0	2	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0013	2644	2	2	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0014	2644	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0015	2644	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0016	2644	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0017	2643	1	0	1	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0018	2644	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0019	2644	1	0	0	0	0	1	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0020	2643	1	1	0	0	0	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0021	2644	1	0	0	0	1	0	copy fasta	ZNF217	chr20	53562071	53598839
ZNF217_chr20_53562071_53598839	0/0	t0022	2644	1	0	0	1	0	0	copy fasta	ZNF217	chr20	53562071	53598839