JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF223_chr19_44047036_44072999	0/0	t0005	951	1	1	0	0	0	0	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	t0006	951	1	0	0	1	0	0	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	t0007	951	1	1	0	0	0	0	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	t0008	951	1	0	0	1	0	0	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	t0009	951	1	0	0	1	0	0	copy fasta	ZNF223	chr19	44047036	44072999
ZNF223_chr19_44047036_44072999	0/0	t0010	951	1	0	1	0	0	0	copy fasta	ZNF223	chr19	44047036	44072999
ZNF224_chr19_44089361_44114826	0/1	t0001	1870	198	26	29	109	12	21	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	1/0	t0002	1870	104	9	20	61	3	10	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	t0003	1872	64	15	15	29	1	4	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	t0004	1873	20	18	2	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	t0005	1870	16	14	1	1	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	t0006	1870	6	5	1	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	t0007	1870	4	4	0	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	t0008	1870	3	0	0	3	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	t0009	1872	2	2	0	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	t0010	1870	2	0	0	2	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	t0011	1870	1	0	1	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	t0012	1872	1	0	0	1	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	t0013	1870	1	0	1	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	t0014	1873	1	1	0	0	0	0	copy fasta	ZNF224	chr19	44089361	44114826
ZNF224_chr19_44089361_44114826	0/0	t0015	1870	1	0	0	0	0	1	copy fasta	ZNF224	chr19	44089361	44114826
ZNF225_chr19_44108399_44139822	1/0	t0001	2327	142	17	30	81	3	10	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0002	2327	115	12	17	75	4	7	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/1	t0003	2327	51	5	15	10	6	14	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0004	2327	14	14	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0005	2293	10	9	1	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0006	2259	9	4	0	2	1	2	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0007	2293	7	0	0	7	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0008	2327	6	6	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0009	2327	5	0	5	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0010	2327	4	4	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0011	2327	3	3	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0012	2361	3	2	1	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0013	2293	3	2	1	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0014	2327	3	3	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0015	2445	3	3	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0016	2293	2	2	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0017	2327	2	0	0	2	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0018	2327	2	2	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0019	2361	1	1	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0020	2392	1	1	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0021	2445	1	0	1	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0022	2327	1	0	1	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0023	2327	1	0	0	0	0	1	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0024	2327	1	0	0	1	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0025	2327	1	1	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0026	2327	1	0	0	1	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0027	2327	1	0	0	0	0	1	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0028	2327	1	1	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0029	2327	1	1	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822