JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF225_chr19_44108399_44139822	0/0	t0030	2327	1	0	0	1	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0031	2327	1	0	0	1	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0032	2327	1	0	0	0	0	1	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0033	2327	1	0	0	1	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0034	2327	1	1	0	0	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0035	2327	1	0	0	1	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0036	2327	1	0	0	1	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0037	2327	1	0	0	1	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF225_chr19_44108399_44139822	0/0	t0038	2327	1	0	0	1	0	0	copy fasta	ZNF225	chr19	44108399	44139822
ZNF226_chr19_44160100_44182685	1/1	t0001	152	247	79	47	104	2	13	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	t0002	152	148	10	29	78	8	23	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	t0003	152	1	0	0	1	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	t0004	152	1	1	0	0	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF226_chr19_44160100_44182685	0/0	t0005	152	1	0	0	1	0	0	copy fasta	ZNF226	chr19	44160100	44182685
ZNF227_chr19_44207532_44242268	1/1	t0001	650	301	48	57	154	10	30	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	t0002	650	87	39	17	30	1	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	t0003	650	9	0	4	1	0	4	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	t0004	650	2	2	0	0	0	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	t0005	650	1	0	0	0	1	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	t0006	650	1	0	0	1	0	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF227_chr19_44207532_44242268	0/0	t0007	650	1	1	0	0	0	0	copy fasta	ZNF227	chr19	44207532	44242268
ZNF229_chr19_44421254_44453472	0/0	t0001	2479	96	3	11	63	5	14	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0002	2480	47	12	11	20	1	3	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0003	2482	45	0	0	41	1	3	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	1/0	t0004	2479	28	7	11	0	4	5	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0005	2482	26	4	0	22	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0006	2481	20	3	4	8	1	4	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0007	2481	11	5	0	6	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0008	2480	11	8	1	2	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0009	2477	9	0	8	1	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0010	2478	9	0	0	8	0	1	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0011	2481	7	0	1	6	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0012	2480	7	7	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0013	2480	6	2	1	2	0	1	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0014	2482	6	0	0	6	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0015	2483	6	0	0	5	0	1	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0016	2482	6	1	2	2	0	1	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0017	2482	5	0	2	0	1	2	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0018	2480	4	4	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0019	2481	4	1	1	2	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0020	2480	4	0	3	0	1	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0021	2479	4	0	0	4	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0022	2481	3	2	0	1	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0023	2482	3	2	0	1	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0024	2482	3	3	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0025	2478	3	0	3	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0026	2479	2	2	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0027	2479	2	0	0	2	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0028	2482	2	1	1	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0029	2480	2	0	1	1	0	0	copy fasta	ZNF229	chr19	44421254	44453472