JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF229_chr19_44421254_44453472	0/0	t0030	2480	2	2	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0031	2483	2	2	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0032	2480	2	2	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0033	2479	2	0	0	2	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0034	2480	2	1	1	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0035	2480	2	2	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0036	2479	2	2	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0037	2483	2	2	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0038	2483	2	0	0	0	0	2	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0039	2479	2	0	2	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0040	2479	2	0	1	1	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0041	2481	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0042	2480	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0043	2481	1	0	0	1	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0044	2479	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0045	2482	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0046	2480	1	0	0	0	0	1	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0047	2482	1	0	0	1	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0048	2482	1	0	0	0	1	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0049	2483	1	0	0	0	1	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0050	2482	1	0	0	1	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0051	2481	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0052	2481	1	0	1	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0053	2481	1	0	1	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0054	2480	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0055	2481	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0056	2479	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0057	2479	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0058	2480	1	0	1	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0059	2482	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0060	2479	1	0	1	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0061	2482	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0062	2480	1	0	0	1	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0063	2482	1	0	0	1	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0064	2482	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0065	2481	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0066	2479	1	0	1	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0067	2481	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0068	2482	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0069	2481	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	t0070	2479	1	0	0	1	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF22_chr10_44995923_45010326	0/1	t0001	1434	143	18	42	49	12	21	copy fasta	ZNF22	chr10	44995923	45010326
ZNF22_chr10_44995923_45010326	0/0	t0002	1435	137	40	27	63	1	6	copy fasta	ZNF22	chr10	44995923	45010326
ZNF22_chr10_44995923_45010326	1/0	t0003	1429	126	25	8	72	5	15	copy fasta	ZNF22	chr10	44995923	45010326
ZNF22_chr10_44995923_45010326	0/0	t0004	1431	21	1	0	20	0	0	copy fasta	ZNF22	chr10	44995923	45010326
ZNF22_chr10_44995923_45010326	0/0	t0005	1434	8	0	0	8	0	0	copy fasta	ZNF22	chr10	44995923	45010326
ZNF22_chr10_44995923_45010326	0/0	t0006	1435	3	2	0	0	0	1	copy fasta	ZNF22	chr10	44995923	45010326
ZNF22_chr10_44995923_45010326	0/0	t0007	1435	3	2	1	0	0	0	copy fasta	ZNF22	chr10	44995923	45010326
ZNF22_chr10_44995923_45010326	0/0	t0008	1435	2	2	0	0	0	0	copy fasta	ZNF22	chr10	44995923	45010326
ZNF22_chr10_44995923_45010326	0/0	t0009	1431	1	0	0	1	0	0	copy fasta	ZNF22	chr10	44995923	45010326