JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C1orf52_chr1_85244953_85264662	0/0	t0012	2706	2	0	0	2	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0013	2706	2	2	0	0	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0014	2706	2	0	0	2	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0015	2706	1	1	0	0	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0016	2706	1	0	0	1	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0017	2706	1	0	0	1	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0018	2706	1	0	1	0	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0019	2706	1	0	0	0	0	1	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0020	2706	1	1	0	0	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0021	2706	1	0	0	1	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0022	2706	1	1	0	0	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0023	2706	1	1	0	0	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0024	2706	1	0	0	0	0	1	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0025	2706	1	1	0	0	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0026	2706	1	0	0	1	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0027	2704	1	0	0	0	1	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0028	2706	1	0	1	0	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0029	2706	1	1	0	0	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0030	2706	1	0	0	0	0	1	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	t0031	2706	1	0	0	1	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf53_chr1_197897630_197912362	1/1	t0001	163	440	93	79	210	14	42	copy fasta	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	t0002	163	2	1	0	0	0	1	copy fasta	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	t0003	163	2	0	1	0	0	1	copy fasta	C1orf53	chr1	197897630	197912362
C1orf54_chr1_150267790_150285916	1/1	t0001	114	434	96	76	198	16	46	copy fasta	C1orf54	chr1	150267790	150285916
C1orf56_chr1_151042751_151056420	0/0	t0001	1063	131	12	19	75	7	18	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	t0002	1061	52	24	12	12	2	2	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	t0003	1064	41	4	5	21	0	11	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	1/1	t0004	1060	38	21	8	3	2	2	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	t0005	1062	34	12	6	9	4	3	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	t0006	1057	14	5	2	2	1	4	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	t0007	1065	6	0	2	3	0	1	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	t0008	1060	5	4	0	0	0	1	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	t0009	1060	4	4	0	0	0	0	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	t0010	1063	2	0	0	2	0	0	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	t0011	1063	2	2	0	0	0	0	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	t0012	1061	2	2	0	0	0	0	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	t0013	1062	1	0	0	0	0	1	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	t0014	1063	1	0	0	0	0	1	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	t0015	1064	1	0	0	1	0	0	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	t0016	1064	1	1	0	0	0	0	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	t0017	1065	1	1	0	0	0	0	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	t0018	1062	1	0	1	0	0	0	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	t0019	1064	1	0	0	1	0	0	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	t0020	1061	1	0	1	0	0	0	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	t0021	1064	1	1	0	0	0	0	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	t0022	1065	1	1	0	0	0	0	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	t0023	1063	1	0	0	1	0	0	copy fasta	C1orf56	chr1	151042751	151056420
C1orf74_chr1_209774208_209789559	1/1	t0001	3875	158	48	24	64	9	11	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0002	3875	104	12	18	54	4	16	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	t0003	3875	73	2	11	57	0	3	copy fasta	C1orf74	chr1	209774208	209789559