JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF236_chr18_76817557_76977901	0/0	t0016	4614	3	0	0	3	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0017	4615	3	3	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0018	4614	2	2	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0019	4614	2	2	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0020	4614	2	1	1	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0021	4612	2	0	0	2	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0022	4614	1	1	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0023	4614	1	0	0	1	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0024	4614	1	1	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0025	4614	1	1	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0026	4614	1	0	0	0	0	1	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0027	4614	1	1	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0028	4614	1	0	0	0	0	1	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0029	4614	1	1	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0030	4615	1	0	1	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0031	4604	1	0	1	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0032	4614	1	1	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0033	4614	1	1	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0034	4614	1	1	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0035	4614	1	0	0	1	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0036	4614	1	0	0	1	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0037	4615	1	1	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0038	4614	1	0	0	1	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0039	4614	1	1	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0040	4612	1	0	1	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0041	4612	1	0	1	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0042	4612	1	0	0	0	0	1	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0043	4612	1	0	0	1	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0044	4615	1	0	0	0	0	1	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0045	4615	1	0	1	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF236_chr18_76817557_76977901	0/0	t0046	4613	1	1	0	0	0	0	copy fasta	ZNF236	chr18	76817557	76977901
ZNF239_chr10_43551344_43579616	0/0	t0001	693	202	48	42	83	3	26	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	0/0	t0002	693	105	18	15	61	5	6	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	1/1	t0003	693	47	24	15	0	2	4	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	0/0	t0004	693	3	3	0	0	0	0	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	0/0	t0005	693	3	0	0	3	0	0	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	0/0	t0006	693	1	0	0	1	0	0	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	0/0	t0007	693	1	0	0	0	0	1	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	0/0	t0008	693	1	0	0	1	0	0	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	0/0	t0009	693	1	0	0	0	0	1	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	0/0	t0010	693	1	0	1	0	0	0	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	0/0	t0011	693	1	0	0	1	0	0	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	0/0	t0012	693	1	0	1	0	0	0	copy fasta	ZNF239	chr10	43551344	43579616
ZNF239_chr10_43551344_43579616	0/0	t0013	693	1	1	0	0	0	0	copy fasta	ZNF239	chr10	43551344	43579616
ZNF23_chr16_71442597_71467247	1/1	t0001	567	378	68	68	180	15	45	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	t0002	567	17	7	9	0	1	0	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	t0003	567	12	12	0	0	0	0	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	t0004	567	7	7	0	0	0	0	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	t0005	567	2	0	1	0	0	1	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	t0006	567	2	0	0	0	0	2	copy fasta	ZNF23	chr16	71442597	71467247