JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZNF248_chr10_37823763_37862610	1/1	t0001	3404	178	51	37	62	2	24	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0002	3404	94	15	12	54	4	9	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0003	3404	50	11	9	26	3	1	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0004	3404	38	0	12	24	1	1	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0005	3405	8	1	5	0	2	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0006	3404	7	6	1	0	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0007	3404	5	0	0	5	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0008	3404	5	1	0	4	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0009	3404	4	4	0	0	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0010	3404	2	0	0	0	1	1	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0011	3404	2	0	0	0	1	1	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0012	3404	2	2	0	0	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0013	3404	1	1	0	0	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0014	3404	1	0	0	1	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0015	3404	1	0	0	1	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0016	3404	1	0	1	0	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0017	3404	1	1	0	0	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0018	3404	1	0	0	0	0	1	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0019	3404	1	1	0	0	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0020	3404	1	1	0	0	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0021	3404	1	0	1	0	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0022	3404	1	0	0	1	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0023	3404	1	1	0	0	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0024	3404	1	1	0	0	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	t0025	3404	1	1	0	0	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF24_chr18_35327227_35349420	1/0	t0001	5150	83	6	8	60	0	8	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/1	t0002	5151	77	5	18	40	0	13	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0003	5151	63	6	24	16	9	8	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0004	5151	46	8	3	34	1	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0005	5151	29	28	1	0	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0006	5151	28	2	6	9	0	11	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0007	5151	21	0	4	17	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0008	5151	9	9	0	0	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0009	5151	7	1	3	0	3	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0010	5151	6	6	0	0	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0011	5150	5	5	0	0	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0012	5150	4	4	0	0	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0013	5151	3	0	3	0	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0014	5150	3	0	3	0	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0015	5151	2	0	1	0	1	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0016	5152	2	2	0	0	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0017	5150	2	2	0	0	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0018	5151	2	2	0	0	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0019	5150	2	2	0	0	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0020	5151	2	2	0	0	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0021	5151	2	0	0	2	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0022	5150	2	0	0	2	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0023	5151	2	2	0	0	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0024	5152	1	0	0	0	0	1	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	t0025	5150	1	0	0	1	0	0	copy fasta	ZNF24	chr18	35327227	35349420